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塞内加尔野生动物源样本中抗生素抗性的种群多样性:携带多药抗性转座子的鉴定

Population Diversity of Antibiotic Resistant in Samples From Wildlife Origin in Senegal: Identification of a Multidrug Resistance Transposon Carrying in .

作者信息

Abdallah Rim, Kuete Yimagou Edmond, Hadjadj Linda, Mediannikov Oleg, Ibrahim Ahmad, Davoust Bernard, Barciela Amanda, Hernandez-Aguilar R Adriana, Diatta Georges, Sokhna Cheikh, Raoult Didier, Rolain Jean-Marc, Baron Sophie Alexandra

机构信息

IRD, APHM, MEPHI, Faculté de Médecine et de Pharmacie, Aix Marseille University, Marseille, France.

IHU Méditerranée Infection, Marseille, France.

出版信息

Front Microbiol. 2022 Mar 18;13:838392. doi: 10.3389/fmicb.2022.838392. eCollection 2022.

Abstract

INTRODUCTION

The role of wildlife in the transmission of antimicrobial resistant (AMR) is suspected but scarcely reported in current studies. Therefore, we studied the dynamics and prevalence of antibiotic-resistant in antibiotic-limited areas of Senegal.

MATERIALS AND METHODS

We collected fecal samples from monkeys and apes (N = 226) and non-fecal environmental samples (N = 113) from Senegal in 2015 and 2019. We grew the samples on selective media, subsequently isolated AMR , and then sequenced their genomes.

RESULTS

We isolated 72 different among which we obtained a resistance rate of 65% for colistin (N = 47/72) and 29% for third generation-cephalosporin (C3G) (29%, N = 21/72). Interestingly, almost 46% of our isolates, among sp., and , belong to 34 new STs. Moreover, the genes , , , , , (), (), , and harbored within a transposon on the plasmid of ST224 were transferred and inserted into a ST10 . phage coding region.

CONCLUSION

Wildlife constitutes a rich, unexplored reservoir of natural microbial diversity, AMR genes and international resistant clones pathogenic in humans. The presence of a transposon that carries AMR genes is intriguing since no antibiotics are used in the non-human primates we studied.

摘要

引言

野生动物在抗菌药物耐药性(AMR)传播中的作用受到怀疑,但在当前研究中鲜有报道。因此,我们研究了塞内加尔抗生素使用受限地区抗生素耐药性的动态变化和流行情况。

材料与方法

我们于2015年和2019年从塞内加尔的猴子和猿类(N = 226)收集粪便样本,并采集非粪便环境样本(N = 113)。我们将样本在选择性培养基上培养,随后分离出AMR细菌,然后对其基因组进行测序。

结果

我们分离出72种不同的细菌,其中我们获得的黏菌素耐药率为65%(N = 47/72),第三代头孢菌素(C3G)耐药率为29%(29%,N = 21/72)。有趣的是,在我们分离出的菌株中,近46%属于34个新的序列类型(STs),包括肺炎克雷伯菌、大肠埃希菌和鲍曼不动杆菌。此外,位于ST224肺炎克雷伯菌质粒转座子上的blaCTX-M-15、blaTEM-1、blaSHV-12、blaOXA-1、blaOXA-2、aac(6’)-Ib-cr、qnrS、qnrB、blaNDM-1和blaIMP-1基因被转移并插入到ST10肺炎克雷伯菌噬菌体编码区域。

结论

野生动物构成了丰富的、未被探索的自然微生物多样性、AMR基因和对人类致病的国际耐药克隆库。携带AMR基因的转座子的存在很有趣,因为我们研究的非人类灵长类动物未使用抗生素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/badc/8971907/a5e971882111/fmicb-13-838392-g001.jpg

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