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使用VGG架构对糖尿病足溃疡中的感染和缺血进行分类

Classification of Infection and Ischemia in Diabetic Foot Ulcers Using VGG Architectures.

作者信息

Güley Orhun, Pati Sarthak, Bakas Spyridon

机构信息

Center for Biomedical Image Computing and Analytics (CBICA), University of Pennsylvania, Philadelphia, PA, USA.

Department of Informatics, Technical University of Munich, Munich, Germany.

出版信息

Diabet Foot Ulcers Grand Chall (2021). 2022;13183:76-89. doi: 10.1007/978-3-030-94907-5_6. Epub 2022 Jan 1.

DOI:10.1007/978-3-030-94907-5_6
PMID:35465060
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9026672/
Abstract

Diabetic foot ulceration (DFU) is a serious complication of diabetes, and a major challenge for healthcare systems around the world. Further infection and ischemia in DFU can significantly prolong treatment and often result in limb amputation, with more severe cases resulting in terminal illness. Thus, early identification and regular monitoring is necessary to improve care, and reduce the burden on healthcare systems. With that in mind, this study attempts to address the problem of infection and ischemia classification in diabetic food ulcers, in four distinct classes. We have evaluated a series of VGG architectures with different layers, following numerous training strategies, including -fold cross validation, data pre-processing options, augmentation techniques, and weighted loss calculations. In favor of transparency and reproducibility, we make all the implementations available through the Generally Nuanced Deep Learning Framework (GaNDLF, github.com/CBICA/GaNDLF. Our best model was evaluated during the DFU Challenge 2021, and was ranked 2, 5, and 7 based on the macro-averaged AUC (area under the curve), macro-averaged F1 score, and macro-averaged recall metrics, respectively. Our findings support that current state-of-the-art architectures provide good results for the DFU image classification task, and further experimentation is required to study the effects of pre-processing and augmentation strategies.

摘要

糖尿病足溃疡(DFU)是糖尿病的一种严重并发症,也是全球医疗系统面临的一项重大挑战。DFU中的进一步感染和缺血会显著延长治疗时间,并常常导致肢体截肢,更严重的情况会导致绝症。因此,早期识别和定期监测对于改善护理以及减轻医疗系统负担是必要的。考虑到这一点,本研究试图解决糖尿病足溃疡中感染和缺血的分类问题,分为四个不同类别。我们按照多种训练策略评估了一系列具有不同层数的VGG架构,包括K折交叉验证、数据预处理选项、增强技术和加权损失计算。为了保证透明度和可重复性,我们通过通用细微差别深度学习框架(GaNDLF,github.com/CBICA/GaNDLF)提供所有实现。我们的最佳模型在2021年DFU挑战赛中进行了评估,分别基于宏平均AUC(曲线下面积)、宏平均F1分数和宏平均召回率指标,排名为第2、第5和第7。我们的研究结果支持当前的先进架构在DFU图像分类任务中能提供良好的结果,并且需要进一步实验来研究预处理和增强策略的效果。

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