从希腊各种小麦酸面团中分离出的六个亚种菌株的高质量基因组草图序列数据。
High-quality draft genome sequence data of six subsp. strains isolated from various Greek wheat sourdoughs.
作者信息
Syrokou Maria K, Paramithiotis Spiros, Skandamis Panagiotis N, Drosinos Eleftherios H, Bosnea Loulouda, Mataragas Marios
机构信息
Laboratory of Food Quality Control and Hygiene, Department of Food Science and Human Nutrition, Agricultural University of Athens, 75 Iera Odos St., 11855 Athens, Greece.
Department of Dairy Research, Institute of Technology of Agricultural Products, Hellenic Agricultural Organization "DIMITRA", 3 Ethnikis Antistaseos St., 45221 Ioannina, Greece.
出版信息
Data Brief. 2021 May 28;37:107172. doi: 10.1016/j.dib.2021.107172. eCollection 2021 Aug.
is a species found in a wide range of foods and other commodities. It can be used as starter or adjunct culture in fermented foods. Herein the annotated high-quality draft genome (scaffolds) of six subsp. strains (LQC 2320, LQC 2422, LQC 2441, LQC 2485, LQC 2516 and LQC 2520) isolated from various Greek wheat sourdoughs is presented. Raw sequence reads were quality checked, assembled into larger contiguous sequences and scaffolds were annotated. The total size of the genomes ranged from 3.13 Mb to 3.49 Mb and the GC content from 45.02% to 45.13%. The total number of coding and non-coding genes were between 3268 and 3723 (3091 to 3492 protein-coding genes, 62 to 107 repeat-region, 54 to 59 tRNAs and 2 to 5 rRNAs, 20 to 30 crispr-repeats, 17 to 26 crispr-spacers and 2 to 4 crispr-arrays). The Whole Genome Shotgun project has been deposited at DDBJ/ENA/GenBank under the accession numbers JAEQMR000000000, JAEQMQ000000000, JAEQMP000000000, JAEQMO000000000, JAEQMN000000000 and JAEQMM000000000. The version described in this paper is version JAEQMR010000000, JAEQMQ010000000, JAEQMP010000000, JAEQMO010000000, JAEQMN010000000 and JAEQMM010000000. Raw sequence reads have been submitted in the Sequence Read Archive (SRA) under the BioProject accession number PRJNA689714 (BioSample accession numbers SAMN17215143, SAMN17215144, SAMN17215145, SAMN17215146, SAMN17215147 and SAMN17215148 and SRA accession numbers SRR13357463, SRR13357464, SRR13357465, SRR13357466, SRR13357467, SRR13357468).
是一种存在于多种食物和其他商品中的物种。它可作为发酵食品中的起始培养物或辅助培养物。本文展示了从各种希腊小麦酸面团中分离出的6个亚种菌株（LQC 2320、LQC 2422、LQC 2441、LQC 2485、LQC 2516和LQC 2520）的注释高质量基因组草图（支架）。对原始序列读数进行质量检查，组装成更大的连续序列并对支架进行注释。基因组的总大小在3.13 Mb至3.49 Mb之间，GC含量在45.02%至45.13%之间。编码基因和非编码基因的总数在3268至3723之间（3091至3492个蛋白质编码基因、62至107个重复区域、54至59个tRNA和2至5个rRNA、20至30个crispr重复序列、17至26个crispr间隔序列和2至4个crispr阵列）。全基因组枪击项目已保存在DDBJ/ENA/GenBank下，登录号为JAEQMR000000000、JAEQMQ000000000、JAEQMP000000000、JAEQMO000000000、JAEQMN000000000和JAEQMM000000000。本文描述的版本是版本JAEQMR010000000、JAEQMQ010000000、JAEQMP010000000、JAEQMO010000000、JAEQMN010000000和JAEQMM010000000。原始序列读数已提交至序列读数存档库（SRA），生物项目登录号为PRJNA689714（生物样本登录号为SAMN17215143、SAMN17215144、SAMN17215145、SAMN17215146、SAMN17215147和SAMN17215148，SRA登录号为SRR13357463、SRR13357464、SRR13357465、SRR13357466、SRR13357467、SRR13357468）。
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