Department of Preventive Medicine and Public Health, Universitat de Valencia, 46010 Valencia, Spain.
Biomedical Research Institute INCLIVA, Clinic University Hospital, 46010 Valencia, Spain.
Int J Environ Res Public Health. 2022 May 3;19(9):5546. doi: 10.3390/ijerph19095546.
Forecasting the behavior of epidemic outbreaks is vital in public health. This makes it possible to anticipate the planning and organization of the health system, as well as possible restrictive or preventive measures. During the COVID-19 pandemic, this need for prediction has been crucial. This paper attempts to characterize the alternative models that were applied in the first wave of this pandemic context, trying to shed light that could help to understand them for future practical applications. A systematic literature search was performed in standardized bibliographic repertoires, using keywords and Boolean operators to refine the findings, and selecting articles according to the main PRISMA 2020 statement recommendations. After identifying models used throughout the first wave of this pandemic (between March and June 2020), we begin by examining standard data-driven epidemiological models, including studies applying models such as SIR (Susceptible-Infected-Recovered), SQUIDER, SEIR, time-dependent SIR, and other alternatives. For data-driven methods, we identify experiences using autoregressive integrated moving average (ARIMA), evolutionary genetic programming machine learning, short-term memory (LSTM), and global epidemic and mobility models. The COVID-19 pandemic has led to intensive and evolving use of alternative infectious disease prediction models. At this point it is not easy to decide which prediction method is the best in a generic way. Moreover, although models such as the LSTM emerge as remarkably versatile and useful, the practical applicability of the alternatives depends on the specific context of the underlying variable and on the information of the target to be prioritized. In addition, the robustness of the assessment is conditioned by heterogeneity in the quality of information sources and differences in the characteristics of disease control interventions. Further comprehensive comparison of the performance of models in comparable situations, assessing their predictive validity, is needed. This will help determine the most reliable and practical methods for application in future outbreaks and eventual pandemics.
预测疫情爆发的行为对于公共卫生至关重要。这使得规划和组织卫生系统,以及采取可能的限制性或预防性措施成为可能。在 COVID-19 大流行期间,这种预测需求至关重要。本文试图描述在这一疫情大流行背景下的第一波疫情中应用的替代模型,试图为未来的实际应用提供帮助。
我们在标准化文献目录中进行了系统的文献检索,使用关键词和布尔运算符来细化发现结果,并根据主要的 PRISMA 2020 声明建议选择文章。在确定了整个第一波疫情(2020 年 3 月至 6 月)期间使用的模型后,我们首先研究了标准的基于数据的流行病学模型,包括应用 SIR(易感-感染-恢复)、SQUIDER、SEIR、时变 SIR 等模型的研究。对于基于数据的方法,我们确定了使用自回归综合移动平均(ARIMA)、进化遗传编程机器学习、短期记忆(LSTM)和全球疫情和流动性模型的经验。
COVID-19 大流行导致了替代传染病预测模型的密集和不断发展的使用。目前,很难一概而论地决定哪种预测方法是最好的。此外,尽管 LSTM 等模型具有显著的多功能性和实用性,但替代方案的实际适用性取决于潜在变量的具体背景以及要优先考虑的目标信息。此外,评估的稳健性受到信息源质量的异质性和疾病控制干预措施特征差异的影响。需要进一步对可比情况下模型的性能进行全面比较,评估其预测有效性,以确定在未来疫情和大流行中应用最可靠和实用的方法。