Nguyen Hai Truong, Truong Minh-Nhat Ha, Le Tan Van, Vo Nam Tri, Nguyen Hoang Duc, Tran Phuong Hoang
Department of Organic Chemistry, Faculty of Chemistry, University of Science, Ho Chi Minh City 700000, Vietnam.
Vietnam National University, Ho Chi Minh City 700000, Vietnam.
ACS Omega. 2022 May 11;7(20):17432-17443. doi: 10.1021/acsomega.2c01814. eCollection 2022 May 24.
We report a new pathway to synthesize pyrano[2,3-]pyrazoles and their binding mode to p38 MAP kinase. Pyrano[2,3-]pyrazole derivatives have been prepared through a four-component reaction of benzyl alcohols, ethyl acetoacetate, phenylhydrazine, and malononitrile in the presence of sulfonated amorphous carbon and eosin Y as catalysts. All products were characterized by melting point, H and C NMR, and HRMS (ESI). The products were screened for their binding activities to both the ATP-binding pocket and the lipid-binding pocket of p38 MAP kinase, using a structure-based flexible docking provided by the engine ADFR. The results showed that eight synthesized compounds had a higher affinity to the lipid pocket than to the other target site, which implied potential applications as allosteric inhibitors. Finally, the most biologically active compound, , had a binding affinity comparable to those of other proven lipid pocket inhibitors, with affinity to the target pocket reaching -10.9932 kcal/mol, and also had the best binding affinity to the ATP-binding pockets in all of our products. Thus, our research provides a novel pathway for synthesizing pyrano[2,3-]pyrazoles and bioinformatic evidence for their biological capability to block p38 MAP kinase pockets, which could be useful for developing cancer or immune drugs.
我们报道了一种合成吡喃并[2,3 - ]吡唑的新途径及其与p38丝裂原活化蛋白激酶的结合模式。吡喃并[2,3 - ]吡唑衍生物是通过苄醇、乙酰乙酸乙酯、苯肼和丙二腈在磺化无定形碳和曙红Y作为催化剂存在下的四组分反应制备的。所有产物均通过熔点、氢核磁共振和碳核磁共振以及高分辨质谱(电喷雾电离)进行表征。使用ADFR引擎提供的基于结构的柔性对接,筛选了这些产物对p38丝裂原活化蛋白激酶的ATP结合口袋和脂质结合口袋的结合活性。结果表明,八种合成化合物对脂质口袋的亲和力高于对其他靶位点的亲和力,这意味着它们作为变构抑制剂具有潜在应用价值。最后,最具生物活性的化合物与其他已证实的脂质口袋抑制剂具有相当的结合亲和力,对靶口袋的亲和力达到 - 10.9932千卡/摩尔,并且在我们所有产物中对ATP结合口袋也具有最佳结合亲和力。因此,我们的研究为合成吡喃并[2,3 - ]吡唑提供了一条新途径,并为其阻断p38丝裂原活化蛋白激酶口袋的生物学能力提供了生物信息学证据,这可能有助于开发抗癌或免疫药物。