Structural Biology, European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France.
Acta Crystallogr D Struct Biol. 2022 Jun 1;78(Pt 6):716-724. doi: 10.1107/S2059798322003977. Epub 2022 May 9.
The use of single isomorphous replacement (SIR) has become less widespread due to difficulties in sample preparation and the identification of isomorphous native and derivative data sets. Non-isomorphism becomes even more problematic in serial experiments, because it adds natural inter-crystal non-isomorphism to heavy-atom-soaking-induced non-isomorphism. Here, a method that can successfully address these issues (and indeed can benefit from differences in heavy-atom occupancy) and additionally significantly simplifies the SIR experiment is presented. A single heavy-atom soak into a microcrystalline slurry is performed, followed by automated serial data collection of partial data sets. This produces a set of data collections with a gradient of heavy-atom occupancies, which are reflected in differential merging statistics. These differences can be exploited by an optimized genetic algorithm to segregate the pool of data sets into native' and
derivative' groups, which can then be used to successfully determine phases experimentally by SIR.
由于样品制备和同晶置换原生和衍生物数据集的识别困难,单一同晶置换(SIR)的使用已经不那么普遍了。在连续实验中,非同晶性变得更加成问题,因为它增加了重原子浸泡诱导的非同晶性与天然晶体间非同晶性。在这里,提出了一种可以成功解决这些问题的方法(并且实际上可以受益于重原子占有率的差异),并且还显著简化了 SIR 实验。将单个重原子浸泡在微晶浆中,然后自动进行部分数据集的连续数据采集。这产生了一组具有重原子占有率梯度的数据集,这反映在差异合并统计中。这些差异可以通过优化的遗传算法来利用,将数据集池分成“原生”和“衍生物”组,然后可以通过 SIR 实验成功地确定相位。