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DNA纳米结构的设计方法与计算工具

Design Approaches and Computational Tools for DNA Nanostructures.

作者信息

Koh Heeyuen, Lee Jae Gyung, Lee Jae Young, Kim Ryan, Tabata Osamu, Jin-Woo Kim, Kim DO-Nyun

机构信息

Institute of Advanced Machines and Design, Seoul National University, Seoul 08826, Republic of Korea.

Department of Mechanical Engineering, Seoul National University, Seoul 08826, Republic of Korea.

出版信息

IEEE Open J Nanotechnol. 2021;2:86-100. doi: 10.1109/ojnano.2021.3119913. Epub 2021 Oct 14.

DOI:10.1109/ojnano.2021.3119913
PMID:35756857
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9232119/
Abstract

Designing a structure in nanoscale with desired shape and properties has been enabled by structural DNA nanotechnology. Design strategies in this research field have evolved to interpret various aspects of increasingly more complex nanoscale assembly and to realize molecular-level functionality by exploring static to dynamic characteristics of the target structure. Computational tools have naturally been of significant interest as they are essential to achieve a fine control over both shape and physicochemical properties of the structure. Here, we review the basic design principles of structural DNA nanotechnology together with its computational analysis and design tools.

摘要

结构DNA纳米技术使得设计具有所需形状和性质的纳米级结构成为可能。该研究领域的设计策略已经不断发展，以阐释日益复杂的纳米级组装的各个方面，并通过探索目标结构的静态到动态特性来实现分子水平的功能。计算工具自然备受关注，因为它们对于精确控制结构的形状和物理化学性质至关重要。在此，我们综述结构DNA纳米技术的基本设计原理及其计算分析和设计工具。

相似文献

[1]
Design Approaches and Computational Tools for DNA Nanostructures.

IEEE Open J Nanotechnol. 2021

[2]
DNA-based construction at the nanoscale: emerging trends and applications.

Nanotechnology. 2018-2-9

[3]
Advancing Wireframe DNA Nanostructures Using Single-Molecule Fluorescence Microscopy Techniques.

Acc Chem Res. 2019-11-1

[4]
Structural DNA Nanotechnology: Artificial Nanostructures for Biomedical Research.

Annu Rev Biomed Eng. 2018-4-4

[5]
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[6]
Chemistries for DNA Nanotechnology.

Chem Rev. 2019-2-4

[7]
DNA-Nanotechnology-Enabled Chiral Plasmonics: From Static to Dynamic.

Acc Chem Res. 2017-9-27

[8]
Tailoring the Mechanical Stiffness of DNA Nanostructures Using Engineered Defects.

ACS Nano. 2019-7-10

[9]
Dynamic DNA nanotechnology using strand-displacement reactions.

Nat Chem. 2011-2

[10]
Self-assembled Nucleic Acid Nanostructures for Biomedical Applications.

Curr Top Med Chem. 2022

引用本文的文献

[1]
Improving DNA nanostructure stability: A review of the biomedical applications and approaches.

Int J Biol Macromol. 2024-3

[2]
Nucleic acid nanostructures for applications: The influence of morphology on biological fate.

Appl Phys Rev. 2023-3

本文引用的文献

[1]
Characterizing the free-energy landscapes of DNA origamis.

Nanoscale. 2022-2-17

[2]
Responsive DNA-Based Supramolecular Hydrogels.

ACS Appl Bio Mater. 2020-5-18

[3]
Rapid prototyping of arbitrary 2D and 3D wireframe DNA origami.

Nucleic Acids Res. 2021-10-11

[4]
Programmable icosahedral shell system for virus trapping.

Nat Mater. 2021-9

[5]
Advancing Biophysics Using DNA Origami.

Annu Rev Biophys. 2021-5-6

[6]
Rapid Computational Analysis of DNA Origami Assemblies at Near-Atomic Resolution.

ACS Nano. 2021-1-26

[7]
Emerging applications at the interface of DNA nanotechnology and cellular membranes: Perspectives from biology, engineering, and physics.

APL Bioeng. 2020-12-8

[8]
Computing the Elastic Mechanical Properties of Rodlike DNA Nanostructures.

J Chem Theory Comput. 2020-12-8

[9]
Meta-DNA structures.

Nat Chem. 2020-11

[10]
Dynamic DNA Assemblies in Biomedical Applications.

Adv Sci (Weinh). 2020-6-8

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