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硬粒小麦中的R2R3-MYB转录因子:全基因组鉴定、禾本科特有的聚类、表达及非生物胁迫下的调控动态

R2R3-MYBs in Durum Wheat: Genome-Wide Identification, Poaceae-Specific Clusters, Expression, and Regulatory Dynamics Under Abiotic Stresses.

作者信息

Blanco Emanuela, Curci Pasquale Luca, Manconi Andrea, Sarli Adele, Zuluaga Diana Lucia, Sonnante Gabriella

机构信息

Institute of Biosciences and Bioresources, National Research Council (CNR), Bari, Italy.

Institute of Biomedical Technologies, National Research Council (CNR), Milan, Italy.

出版信息

Front Plant Sci. 2022 Jun 20;13:896945. doi: 10.3389/fpls.2022.896945. eCollection 2022.

DOI:10.3389/fpls.2022.896945
PMID:35795353
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9252425/
Abstract

MYB transcription factors (TFs) represent one of the biggest TF families in plants, being involved in various specific plant processes, such as responses to biotic and abiotic stresses. The implication of MYB TFs in the tolerance mechanisms to abiotic stress is particularly interesting for crop breeding, since environmental conditions can negatively affect growth and productivity. Wheat is a worldwide-cultivated cereal, and is a major source of plant-based proteins in human food. In particular, durum wheat plays an important role in global food security improvement, since its adaptation to hot and dry conditions constitutes the base for the success of wheat breeding programs in future. In the present study, a genome-wide identification of R2R3-MYB TFs in durum wheat was performed. MYB profile search and phylogenetic analyses based on homology with Arabidopsis and rice MYB TFs led to the identification of 233 R2R3-TdMYB ( MYB). Three Poaceae-specific MYB clusters were detected, one of which had never been described before. The expression of eight selected genes under different abiotic stress conditions, revealed that most of them responded especially to salt and drought stress. Finally, gene regulatory network analyses led to the identification of 41 gene targets for three TdR2R3-MYBs that represent novel candidates for functional analyses. This study provides a detailed description of durum wheat R2R3-MYB genes and contributes to a deeper understanding of the molecular response of durum wheat to unfavorable climate conditions.

摘要

MYB转录因子(TFs)是植物中最大的TF家族之一,参与各种特定的植物过程,如对生物和非生物胁迫的响应。由于环境条件会对作物的生长和生产力产生负面影响,因此MYB转录因子在非生物胁迫耐受机制中的作用对于作物育种尤为重要。小麦是一种全球广泛种植的谷物,是人类食物中植物性蛋白质的主要来源。特别是硬粒小麦在全球粮食安全改善中发挥着重要作用,因为其对炎热和干燥条件的适应性是未来小麦育种计划成功的基础。在本研究中,对硬粒小麦中的R2R3-MYB转录因子进行了全基因组鉴定。基于与拟南芥和水稻MYB转录因子的同源性进行的MYB谱搜索和系统发育分析,鉴定出233个R2R3-TdMYB(MYB)。检测到三个禾本科特有的MYB簇,其中一个此前从未被描述过。对八个选定基因在不同非生物胁迫条件下的表达分析表明,它们中的大多数对盐胁迫和干旱胁迫有特别的响应。最后,基因调控网络分析鉴定出三个TdR2R3-MYB的41个基因靶标,这些靶标是功能分析的新候选对象。本研究详细描述了硬粒小麦R2R3-MYB基因,有助于更深入地了解硬粒小麦对不利气候条件的分子响应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/8d6fb216758d/fpls-13-896945-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/45cfd7b67bd5/fpls-13-896945-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/0b5721cf019f/fpls-13-896945-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/d9b191bd3144/fpls-13-896945-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/17248acbfca6/fpls-13-896945-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/f03b5d26534f/fpls-13-896945-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/8d6fb216758d/fpls-13-896945-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/45cfd7b67bd5/fpls-13-896945-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/0b5721cf019f/fpls-13-896945-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/d9b191bd3144/fpls-13-896945-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/17248acbfca6/fpls-13-896945-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/f03b5d26534f/fpls-13-896945-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d61e/9252425/8d6fb216758d/fpls-13-896945-g006.jpg

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