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Machine Learning Predictor of Immune Checkpoint Blockade Response in Gastric Cancer.

作者信息

Sung Ji-Yong, Cheong Jae-Ho

机构信息

Department of Laboratory Medicine, Yonsei University College of Medicine, Seoul 03722, Korea.

Department of Surgery, Yonsei University College of Medicine, Seoul 03722, Korea.

出版信息

Cancers (Basel). 2022 Jun 29;14(13):3191. doi: 10.3390/cancers14133191.


DOI:10.3390/cancers14133191
PMID:35804967
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9265060/
Abstract

Predicting responses to immune checkpoint blockade (ICB) lacks official standards despite the discovery of several markers. Expensive drugs and different reactivities for each patient are the main disadvantages of immunotherapy. Gastric cancer is refractory and stem-like in nature and does not respond to immunotherapy. In this study, we aimed to identify a characteristic gene that predicts ICB response in gastric cancer and discover a drug target for non-responders. We built and evaluated a model using four machine learning algorithms for two cohorts of bulk and single-cell RNA seq to predict ICB response in gastric cancer patients. Through the LASSO feature selection, we discovered a marker gene signature that distinguishes responders from non-responders. , a candidate characteristic gene selected by all four machine learning algorithms, had a significantly high prevalence in non-responders ( = 0.0019) and showed a poor prognosis ( = 0.0014) at high expression values. This is the first study to discover a signature gene for predicting ICB response in gastric cancer by molecular subtype and provides broad insights into the treatment of stem-like immuno-oncology through precision medicine.

摘要

相似文献

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Machine Learning Predictor of Immune Checkpoint Blockade Response in Gastric Cancer.

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引用本文的文献

[1]
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Front Pharmacol. 2024-5-31

[2]
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J Cell Mol Med. 2024-4

[3]
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[4]
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Curr Med Chem. 2025

[5]
Gene signature related to cancer stem cells and fibroblasts of stem-like gastric cancer predicts immunotherapy response.

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[6]
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[7]
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[8]
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[9]
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本文引用的文献

[1]
Prognosis-related gene signature is enriched in cancer-associated fibroblasts in the stem-like subtype of gastric cancer.

Clin Transl Med. 2022-6

[2]
The Matrisome Is Associated with Metabolic Reprograming in Stem-like Phenotypes of Gastric Cancer.

Cancers (Basel). 2022-3-10

[3]
New Immunometabolic Strategy Based on Cell Type-Specific Metabolic Reprogramming in the Tumor Immune Microenvironment.

Cells. 2022-2-22

[4]
Development and validation of a prognostic and predictive 32-gene signature for gastric cancer.

Nat Commun. 2022-2-9

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Single-cell analysis of gastric pre-cancerous and cancer lesions reveals cell lineage diversity and intratumoral heterogeneity.

NPJ Precis Oncol. 2022-1-27

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Multi-omic machine learning predictor of breast cancer therapy response.

Nature. 2022-1

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Tumor-Associated Macrophages and Inflammatory Microenvironment in Gastric Cancer: Novel Translational Implications.

Int J Mol Sci. 2021-4-7

[9]
Novel HER2-Directed Treatments in Advanced Gastric Carcinoma: AnotHER Paradigm Shift?

Cancers (Basel). 2021-4-1

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Biotechnol Adv. 2021

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