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番茄中PLATZ转录因子的全基因组鉴定及其在种子发育过程中的表达特征

Genome-Wide Identification of PLATZ Transcription Factors in L. and Their Expression Characteristics During Seed Development.

作者信息

Han Xin, Rong Hao, Tian Yating, Qu Yanshu, Xu Meng, Xu Li-An

机构信息

Key Laboratory of Forestry Genetics and Biotechnology of Ministry of Education, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China.

出版信息

Front Plant Sci. 2022 Jun 23;13:946194. doi: 10.3389/fpls.2022.946194. eCollection 2022.

Abstract

Plant AT-rich protein and zinc-binding protein (PLATZ) is a class of plant-specific zinc-dependent DNA-binding protein that binds to A/T-rich DNA sequences. PLATZ plays an important role in seed development, water tolerance, and cell proliferation in early plant growth. In this study, 11 s were identified from the ginkgo genome with complete PLATZ-conserved domains, which represents a smaller number compared with angiosperms. Multi-species phylogenetic analysis showed that PLATZ genes were conserved in seed plants, and the 11 members were represented by four groups, among which groups I and II were closely related. Analysis of gene structures, sequence module characteristics, and expression patterns showed that s were similar within and differed between groups. RNA-seq and qRT-PCR results showed that s had distinct expression patterns. Most genes were associated with seed development, among which six genes were highly related. Subcellular localization experiments showed that six GbPLATZ proteins related to seed development were localized in the nucleus, suggesting that they might function as traditional transcription factors. This study provides a basis for understanding the structural differentiation, evolutionary characteristics, expression profile, and potential functions of PLATZ transcription factors in .

摘要

植物富含AT的蛋白和锌结合蛋白(PLATZ)是一类植物特有的锌依赖性DNA结合蛋白,可与富含A/T的DNA序列结合。PLATZ在种子发育、耐旱性以及植物早期生长中的细胞增殖过程中发挥重要作用。在本研究中,从银杏基因组中鉴定出11个具有完整PLATZ保守结构域的基因,与被子植物相比数量较少。多物种系统发育分析表明,PLATZ基因在种子植物中保守,11个成员分为四组,其中第一组和第二组关系密切。对基因结构、序列模块特征和表达模式的分析表明,组内基因相似而组间不同。RNA测序和qRT-PCR结果表明,这些基因具有不同的表达模式。大多数基因与种子发育相关,其中六个基因高度相关。亚细胞定位实验表明,六个与种子发育相关的GbPLATZ蛋白定位于细胞核,表明它们可能作为传统转录因子发挥作用。本研究为了解银杏中PLATZ转录因子的结构分化、进化特征、表达谱和潜在功能提供了依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af5e/9262033/7e7e54bebc3c/fpls-13-946194-g001.jpg

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