Beijing University of Information Science and Technology, 100101 Beijing, China.
Xinjiang Institute of Technology, 843000 Xinjiang, China.
Biomed Res Int. 2022 Aug 16;2022:5861928. doi: 10.1155/2022/5861928. eCollection 2022.
The development of neuroimaging technology and molecular genetics has produced a large amount of imaging genetics data, which has greatly promoted the study of complex mental diseases. However, because the feature dimension of the data is too high, the correlation measure assumes that the data obey Gaussian distribution, and traditional algorithms often cannot explain these two types of data well. This article mainly studies image genetics analysis and its application based on neural network. In this paper, based on the theory and application technology of neural network, the tree structure is established by prior knowledge, that is, each SNP site is used as a leaf node of the tree, and the LD block and genome formed by the linkage imbalance of multiple SNP sites are used as intermediate nodes. Then, the hierarchical relationship of features was introduced. On this basis, a sparse learning method based on tree structure guidance is used to select features from multiple features of multiple SNPs locus regression candidate brain regions. Finally, the identification of SNPs in feature selection is used to predict quantitative traits of brain regions. The distribution of the typical vector values obtained by the algorithm in the experimental data is basically consistent with the distribution of the median of the actual data, and the correlation coefficient obtained is closest to the actual correlation coefficient in the data set. The average correlation coefficient of the algorithm reaches 82.3%, which is about 4.2% higher than the control algorithm. Experimental results show that this method can not only significantly improve the regression performance but also detect the risk gene SNPs loci with spatial clustering features and functional interpretation significance. It is practical and effective to use it in clinical trials.
神经影像学技术和分子遗传学的发展产生了大量的影像遗传学数据,极大地促进了复杂精神疾病的研究。然而,由于数据的特征维度过高,相关度量假设数据服从高斯分布,传统算法往往不能很好地解释这两种类型的数据。本文主要研究基于神经网络的影像遗传学分析及其应用。本文基于神经网络的理论和应用技术,通过先验知识建立树状结构,即每个 SNP 位点作为树的叶节点,多个 SNP 位点连锁不平衡形成的 LD 块和基因组作为中间节点。然后,引入特征的层次关系。在此基础上,采用基于树结构指导的稀疏学习方法,从多个 SNP 位点回归候选脑区的多个特征中选择特征。最后,对特征选择中的 SNPs 进行识别,以预测脑区的定量性状。算法得到的典型向量值在实验数据中的分布基本与实际数据中位数的分布一致,得到的相关系数在数据集中最接近实际相关系数。算法的平均相关系数达到 82.3%,比对照算法高约 4.2%。实验结果表明,该方法不仅能显著提高回归性能,还能检测具有空间聚类特征和功能解释意义的风险基因 SNPs 位点。在临床试验中使用该方法具有实际意义和有效性。