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采用多层感知器非支配排序遗传算法 II(MLP-NSGAII)对桂竹香进行体外芽增殖的数学建模与优化。

Mathematical modeling and optimizing the in vitro shoot proliferation of wallflower using multilayer perceptron non-dominated sorting genetic algorithm-II (MLP-NSGAII).

机构信息

Department of Horticultural Science, College of Agriculture, Shiraz University, Shiraz, Iran.

Department of Electrical Engineering, Amirkabir University of Technology, Tehran, Iran.

出版信息

PLoS One. 2022 Sep 9;17(9):e0273009. doi: 10.1371/journal.pone.0273009. eCollection 2022.

DOI:10.1371/journal.pone.0273009
PMID:36083887
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9462766/
Abstract

Novel computational methods such as artificial neural networks (ANNs) can facilitate modeling and predicting results of tissue culture experiments and thereby decrease the number of experimental treatments and combinations. The objective of the current study is modeling and predicting in vitro shoot proliferation of Erysimum cheiri (L.) Crantz, which is an important bedding flower and medicinal plant. Its micropropagation has not been investigated before and as a case study multilayer perceptron- non-dominated sorting genetic algorithm-II (MLP-NSGAII) can be applied. MLP was used for modeling three outputs including shoots number (SN), shoots length (SL), and callus weight (CW) based on four variables including 6-benzylaminopurine (BAP), kinetin (Kin), 1-naphthalene acetic acid (NAA) and gibberellic acid (GA3). The R2 correlation values of 0.84, 0.99 and 0.93 between experimental and predicted data were obtained for SN, SL, and CW, respectively. These results proved the high accuracy of MLP model. Afterwards the model connected to Non-dominated Sorting Genetic Algorithm-II (NSGA-II) was used to optimize input variables for obtaining the best predicted outputs. The results of sensitivity analysis indicated that SN and CW were more sensitive to BA, followed by Kin, NAA and GA. For SL, more sensitivity was obtained for GA3 than NAA. The validation experiment indicated that the difference between the validation data and MLP-NSGAII predicted data were negligible. Generally, MLP-NSGAII can be considered as a powerful method for modeling and optimizing in vitro studies.

摘要

新型计算方法,如人工神经网络(ANNs),可以促进组织培养实验的建模和预测结果,从而减少实验处理和组合的数量。本研究的目的是对欧亚香花芥(Erysimum cheiri(L.)Crantz)的离体芽增殖进行建模和预测,欧亚香花芥是一种重要的花坛花卉和药用植物。其微繁殖尚未被研究过,因此可以作为案例研究应用多层感知器-非支配排序遗传算法 II(MLP-NSGAII)。MLP 用于基于包括 6-苄基氨基嘌呤(BAP)、激动素(Kin)、1-萘乙酸(NAA)和赤霉素(GA3)在内的四个变量对三个输出进行建模,包括芽数(SN)、芽长(SL)和愈伤组织重量(CW)。SN、SL 和 CW 的实验数据与预测数据之间的 R2 相关值分别为 0.84、0.99 和 0.93,证明了 MLP 模型的高精度。然后,将连接到非支配排序遗传算法 II(NSGA-II)的模型用于优化输入变量,以获得最佳预测输出。敏感性分析的结果表明,SN 和 CW 对 BA 更敏感,其次是 Kin、NAA 和 GA。对于 SL,GA3 的敏感性高于 NAA。验证实验表明,验证数据与 MLP-NSGAII 预测数据之间的差异可以忽略不计。总体而言,MLP-NSGAII 可以被认为是建模和优化体外研究的强大方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2470/9462766/ab67e275e22d/pone.0273009.g006.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2470/9462766/b0a7663b9d4d/pone.0273009.g002.jpg
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