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机器学习辅助开发和优化消毒方案及划破处理方法以提高大麻种子的体外萌发率

Machine Learning-Mediated Development and Optimization of Disinfection Protocol and Scarification Method for Improved In Vitro Germination of Cannabis Seeds.

作者信息

Pepe Marco, Hesami Mohsen, Jones Andrew Maxwell Phineas

机构信息

Department of Plant Agriculture, Gosling Research Institute for Plant Preservation, University of Guelph, Guelph, ON N1G 2W1, Canada.

出版信息

Plants (Basel). 2021 Nov 6;10(11):2397. doi: 10.3390/plants10112397.

DOI:10.3390/plants10112397
PMID:34834760
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8619272/
Abstract

In vitro seed germination is a useful tool for developing a variety of biotechnologies, but cannabis has presented some challenges in uniformity and germination time, presumably due to the disinfection procedure. Disinfection and subsequent growth are influenced by many factors, such as media pH, temperature, as well as the types and levels of contaminants and disinfectants, which contribute independently and dynamically to system complexity and nonlinearity. Hence, artificial intelligence models are well suited to model and optimize this dynamic system. The current study was aimed to evaluate the effect of different types and concentrations of disinfectants (sodium hypochlorite, hydrogen peroxide) and immersion times on contamination frequency using the generalized regression neural network (GRNN), a powerful artificial neural network (ANN). The GRNN model had high prediction performance (R > 0.91) in both training and testing. Moreover, a genetic algorithm (GA) was subjected to the GRNN to find the optimal type and level of disinfectants and immersion time to determine the best methods for contamination reduction. According to the optimization process, 4.6% sodium hypochlorite along with 0.008% hydrogen peroxide for 16.81 min would result in the best outcomes. The results of a validation experiment demonstrated that this protocol resulted in 0% contamination as predicted, but germination rates were low and sporadic. However, using this sterilization protocol in combination with the scarification of in vitro cannabis seed (seed tip removal) resulted in 0% contamination and 100% seed germination within one week.

摘要

体外种子萌发是开发多种生物技术的有用工具,但大麻在均匀性和萌发时间方面存在一些挑战,可能是由于消毒程序所致。消毒及后续生长受许多因素影响,如培养基pH值、温度以及污染物和消毒剂的类型与水平,这些因素独立且动态地影响系统的复杂性和非线性。因此,人工智能模型非常适合对这个动态系统进行建模和优化。本研究旨在使用强大的人工神经网络(ANN)——广义回归神经网络(GRNN)来评估不同类型和浓度的消毒剂(次氯酸钠、过氧化氢)以及浸泡时间对污染频率的影响。GRNN模型在训练和测试中均具有较高的预测性能(R>0.91)。此外,对GRNN应用遗传算法(GA)以找到消毒剂的最佳类型和水平以及浸泡时间,从而确定减少污染的最佳方法。根据优化过程,4.6%的次氯酸钠与0.008%的过氧化氢一起浸泡16.81分钟将产生最佳效果。验证实验结果表明,该方案如预期导致0%的污染,但发芽率较低且不规律。然而,将这种灭菌方案与体外大麻种子的划破处理(去除种子尖端)相结合,可在一周内实现0%的污染和100%的种子萌发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e60/8619272/3a8149af9612/plants-10-02397-g007.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8e60/8619272/eebe19683c70/plants-10-02397-g002.jpg
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