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血 miR-654-5p、miR-126、miR-10b 和 miR-144 在结直肠癌诊断中的临床价值。

The Clinical Value of Blood miR-654-5p, miR-126, miR-10b, and miR-144 in the Diagnosis of Colorectal Cancer.

机构信息

General Surgery Department, Shanxi Bethune Hospital/General Surgery Department, Third Hospital of Shanxi Medical University, Taiyuan, Shanxi 030032, China.

Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei 430030, China.

出版信息

Comput Math Methods Med. 2022 Oct 13;2022:8225966. doi: 10.1155/2022/8225966. eCollection 2022.

Abstract

Colorectal cancer (CRC) is the third cause of cancer-related death and the fourth most frequently diagnosed cancer across the globe. The objective of this study is to obtain novel and effective diagnostic markers to enrich CRC diagnosis methods. Herein, exosomal miRNA expression data of CRC and normal blood were subjected to XGBoost algorithm, and 5 miRNAs related to CRC diagnosis were primarily confirmed. Then multilayer perceptron (MLP) classifiers were constructed based on different subsets. Via integrated feature selection (IFS), we noticed that the MLP classifier constructed by the first four miRNAs (miR-654-5p, miR-126, miR-10b, and miR-144) had the highest Matthews correlation coefficient (MCC). Subsequently, principal component analysis (PCA) for dimensionality reduction was performed on samples based on the miR-654-5p, miR-126, miR-10b, and miR-144 expression data. The signature based on these four feature miRNAs, as the analysis indicated, could effectively distinguish CRC samples from normal samples. Further, we extracted the exosomes from clinical blood samples and applied qRT-PCR analysis, which revealed that the expression of these four feature miRNAs was in the trend of that in the test set. Collectively, these four feature miRNAs might be tumor biomarkers in the serum, and our study offers innovative thinking on early-stage CRC diagnosis.

摘要

结直肠癌(CRC)是癌症相关死亡的第三大原因,也是全球第四大最常被诊断出的癌症。本研究的目的是获得新的有效的诊断标志物,以丰富 CRC 的诊断方法。在此,我们对 CRC 和正常血液的外泌体 miRNA 表达数据进行了 XGBoost 算法分析,初步确定了 5 个与 CRC 诊断相关的 miRNA。然后,我们基于不同的子集构建了多层感知机(MLP)分类器。通过综合特征选择(IFS),我们注意到基于前四个 miRNA(miR-654-5p、miR-126、miR-10b 和 miR-144)构建的 MLP 分类器具有最高的马修斯相关系数(MCC)。随后,我们基于 miR-654-5p、miR-126、miR-10b 和 miR-144 的表达数据对样本进行主成分分析(PCA)降维。分析表明,基于这四个特征 miRNA 的特征签名可以有效地将 CRC 样本与正常样本区分开来。此外,我们从临床血液样本中提取外泌体,并进行 qRT-PCR 分析,结果显示这四个特征 miRNA 的表达趋势与测试集中一致。综上所述,这四个特征 miRNA 可能是血清中的肿瘤标志物,我们的研究为早期 CRC 的诊断提供了创新性的思路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6d53/9584656/3b3a914d24c5/CMMM2022-8225966.001.jpg

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