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使用理查兹曲线对新冠疫情确诊病例进行时空建模:以意大利各地区为例

Spatio-temporal modelling of COVID-19 incident cases using Richards' curve: An application to the Italian regions.

作者信息

Mingione Marco, Alaimo Di Loro Pierfrancesco, Farcomeni Alessio, Divino Fabio, Lovison Gianfranco, Maruotti Antonello, Lasinio Giovanna Jona

机构信息

University of Rome "La Sapienza", Dpt. of Statistical Sciences, Rome, Italy.

Institute of Applied Computing "M. Picone" (IAC - CNR), Italy.

出版信息

Spat Stat. 2022 Jun;49:100544. doi: 10.1016/j.spasta.2021.100544. Epub 2021 Oct 9.

DOI:10.1016/j.spasta.2021.100544
PMID:36407655
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9643104/
Abstract

We introduce an extended generalised logistic growth model for discrete outcomes, in which spatial and temporal dependence are dealt with the specification of a network structure within an Auto-Regressive approach. A major challenge concerns the specification of the network structure, crucial to consistently estimate the canonical parameters of the generalised logistic curve, e.g. peak time and height. We compared a network based on geographic proximity and one built on historical data of transport exchanges between regions. Parameters are estimated under the Bayesian framework, using Stan probabilistic programming language. The proposed approach is motivated by the analysis of both the first and the second wave of COVID-19 in Italy, i.e. from February 2020 to July 2020 and from July 2020 to December 2020, respectively. We analyse data at the regional level and, interestingly enough, prove that substantial spatial and temporal dependence occurred in both waves, although strong restrictive measures were implemented during the first wave. Accurate predictions are obtained, improving those of the model where independence across regions is assumed.

摘要

我们引入了一种用于离散结果的扩展广义逻辑增长模型,其中空间和时间依赖性通过自回归方法中的网络结构规范来处理。一个主要挑战涉及网络结构的规范,这对于一致地估计广义逻辑曲线的典型参数(例如峰值时间和高度)至关重要。我们比较了基于地理邻近性的网络和基于区域间运输交换历史数据构建的网络。参数在贝叶斯框架下使用Stan概率编程语言进行估计。所提出的方法是受对意大利第一波和第二波新冠疫情的分析所推动,即分别从2020年2月到2020年7月以及从2020年7月到2020年12月。我们在区域层面分析数据,有趣的是,证明了两波疫情中都存在显著的空间和时间依赖性,尽管在第一波疫情期间实施了严格的限制措施。我们获得了准确的预测结果,改进了假设区域间独立性的模型的预测。

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Misspecified modeling of subsequent waves during COVID-19 outbreak: A change-point growth model.错误指定的 COVID-19 爆发后续波建模:一个时变增长模型。
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Bayesian profile regression to study the ecologic associations of correlated environmental exposures with excess mortality risk during the first year of the Covid-19 epidemic in lombardy, Italy.贝叶斯轮廓回归分析意大利伦巴第地区新冠疫情第一年期间与超额死亡风险相关的环境暴露的生态关联。
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