Zhangqiu District Hospital of Traditional Chinese Medicine, Jinan, China.
Affiliated Hospital of Shandong University of Traditional Chinese Medicine, Jinan, China.
Comput Math Methods Med. 2022 Dec 28;2022:4286168. doi: 10.1155/2022/4286168. eCollection 2022.
Using network pharmacology and molecular docking, we explored the mechanism of Angelicae Pubescentis- (AP-) Herba Taxilli (HT) in the treatment of osteoarthritis (OA).
We selected Traditional Chinese Medicine Systems Pharmacology platform (TCMSP) to filtrate the practical components and targets of AP-HT. The disease targets of "osteoarthritis (OA)" were collected by GeneCards, DrugBank, TTD, OMIM, and PharmGKB databases, and the component-target interaction network was established by Cytoscape 3.9.1. Then, we set the protein-protein interaction (PPI) network by the STRING platform and visualized by Cytoscape 3.9.1. We also conducted Gene Ontology (GO) analysis and Kyoto Encyclopedia of Gene and Genome (KEGG) pathway enrichment analysis via the bioinformatics platform. Finally, we performed molecular docking using PyMOL 2.3.0 and AutoDock Vina software.
11 potential compounds were selected, and 1007 OA disease targets were collected. Ninety-four main targets of the AP-HT compound in the treatment of OA have been defined. PPI network demonstrated that JUN, RELA, TNF, IL6, MAPK1, TP53, AKT1, FOS, IL10, and MYC might serve as the critical targets of AP-HT for the treatment of OA. Moreover, membrane raft, membrane microdomain, cellular response to chemical stress, and cytokine receptor binding may play essential roles in the treatment of OA via GO analysis. The main functional pathways involved in these critical targets include fluid shear stress and atherosclerosis, lipid and atherosclerosis, IL-17 signaling pathway, age-range signaling pathway in diabetic composites, and TNF signaling pathway via KEGG analysis. The results of molecular docking showed that the critical ingredients of AP-HT had an excellent affinity to related nuclear genes.
利用网络药理学和分子对接技术,探讨当归-鸡血藤(AP-HT)治疗骨关节炎(OA)的作用机制。
利用中药系统药理学数据库和分析平台(TCMSP)筛选 AP-HT 的有效成分和作用靶点。通过 GeneCards、DrugBank、TTD、OMIM、PharmGKB 等数据库收集“骨关节炎(OA)”疾病靶点,运用 Cytoscape 3.9.1 软件构建成分-靶点相互作用网络。然后,通过 STRING 平台构建蛋白-蛋白相互作用(PPI)网络,并运用 Cytoscape 3.9.1 软件进行可视化处理。采用生物信息学在线分析平台进行基因本体(GO)分析和京都基因与基因组百科全书(KEGG)通路富集分析。最后,利用 PyMOL 2.3.0 和 AutoDock Vina 软件进行分子对接。
筛选出 11 个潜在化合物,共收集到 1007 个 OA 疾病靶点。明确了 AP-HT 治疗 OA 的 94 个主要作用靶点。PPI 网络显示,JUN、RELA、TNF、IL6、MAPK1、TP53、AKT1、FOS、IL10 和 MYC 可能是 AP-HT 治疗 OA 的关键靶点。GO 分析表明,膜筏、膜微区、细胞对化学应激的反应和细胞因子受体结合在 AP-HT 治疗 OA 中可能发挥重要作用。这些关键靶点主要涉及的功能通路包括流体剪切应激和动脉粥样硬化、脂质和动脉粥样硬化、IL-17 信号通路、糖尿病综合物中的年龄范围信号通路和 TNF 信号通路。分子对接结果显示,AP-HT 的关键成分与相关核基因具有良好的亲和力。