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Genome-based analysis of infrequent serotypes through the Thai pork production chain.通过泰国猪肉生产链对罕见血清型进行基于基因组的分析。
Front Microbiol. 2022 Aug 25;13:968695. doi: 10.3389/fmicb.2022.968695. eCollection 2022.
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Foods. 2021 Apr 21;10(5):907. doi: 10.3390/foods10050907.
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GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk：一个使用基因组分类数据库对基因组进行分类的工具包。
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Performance of neural network basecalling tools for Oxford Nanopore sequencing.基于神经网络的牛津纳米孔测序碱基调用工具的性能。
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Bandage: interactive visualization of de novo genome assemblies.绷带：从头基因组组装的交互式可视化
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从泰国一家家禽养殖场分离得到的三株沙门氏菌的全基因组序列

Complete Genome Sequences of Three Salmonella Strains Obtained from a Poultry Production Farm in Thailand.

作者信息

Arigul Tantip, Jenjaroenpun Piroon, Wankaew Natnicha, Vespirom Juthatip, Thuamkaew Phatcharaporn, Wongsurawat Thidathip, Ledlod Sudarat

机构信息

Division of Medical Bioinformatics, Research Department, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand.

Siriraj Long-Read Lab (Si-LoL), Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand.

出版信息

Microbiol Resour Announc. 2023 Feb 16;12(2):e0110422. doi: 10.1128/mra.01104-22. Epub 2023 Jan 18.

DOI:10.1128/mra.01104-22
PMID:36651783
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9933732/
Abstract

Here, we report three complete circular genome sequences of Salmonella enterica SalSpp07, SalSpp08, and SalSpp09, which were isolated from chicken meat and skin during quality control on the production line. The genomes were closed using a hybrid assembly method with short and long sequencing reads.

摘要

在此，我们报告了肠炎沙门氏菌SalSpp07、SalSpp08和SalSpp09的三个完整环状基因组序列，它们是在生产线质量控制过程中从鸡肉和鸡皮中分离出来的。这些基因组通过使用短读长和长读长测序相结合的混合组装方法完成了封闭。