• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用人工力诱导反应方法进行从头反应发现。

Toward Ab Initio Reaction Discovery Using the Artificial Force Induced Reaction Method.

机构信息

Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Japan.

Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo, Japan; email:

出版信息

Annu Rev Phys Chem. 2023 Apr 24;74:287-311. doi: 10.1146/annurev-physchem-102822-101025. Epub 2023 Jan 31.

DOI:10.1146/annurev-physchem-102822-101025
PMID:36719976
Abstract

Predicting the whole process of a chemical reaction while solving kinetic equations presents an opportunity to realize an on-the-fly kinetic simulation that directly discovers chemical reactions with their product yields. Such a simulation avoids the combinatorial explosion of reaction patterns to be examined by narrowing the search space based on the kinetic analysis of the reaction path network, and would open a new paradigm beyond the conventional two-step approach, which requires a reaction path network prior to performing a kinetic simulation. The authors addressed this issue and developed a practical method by combining the artificial force induced reaction method with the rate constant matrix contraction method. Two algorithms are available for this purpose: a forward mode with reactants as the input and a backward mode with products as the input. This article first numerically verifies these modes for known reactions and then demonstrates their application to the actual reaction discovery. Finally, the challenges of this method and the prospects for ab initio reaction discovery are discussed.

摘要

预测化学反应的全过程,同时求解动力学方程,为实现实时动力学模拟提供了机会,这种模拟可以直接发现具有产物产率的化学反应。这种模拟通过基于反应路径网络的动力学分析来缩小搜索空间,避免了通过检查反应模式的组合爆炸,从而超越了传统的两步法,这种两步法在进行动力学模拟之前需要一个反应路径网络。作者通过将人为力诱导反应法与速率常数矩阵收缩法相结合,解决了这一问题,并开发了一种实用的方法。为此目的,有两种算法可用:一种是将反应物作为输入的正向模式,另一种是将产物作为输入的反向模式。本文首先对已知反应进行了数值验证,然后展示了它们在实际反应发现中的应用。最后,讨论了该方法的挑战和从头发现反应的前景。

相似文献

1
Toward Ab Initio Reaction Discovery Using the Artificial Force Induced Reaction Method.使用人工力诱导反应方法进行从头反应发现。
Annu Rev Phys Chem. 2023 Apr 24;74:287-311. doi: 10.1146/annurev-physchem-102822-101025. Epub 2023 Jan 31.
2
Quantum Chemical Calculations to Trace Back Reaction Paths for the Prediction of Reactants.用于追溯反应路径以预测反应物的量子化学计算。
JACS Au. 2022 Apr 22;2(5):1181-1188. doi: 10.1021/jacsau.2c00157. eCollection 2022 May 23.
3
Reaction path potential for complex systems derived from combined ab initio quantum mechanical and molecular mechanical calculations.结合从头算量子力学和分子力学计算得出的复杂体系的反应路径势能。
J Chem Phys. 2004 Jul 1;121(1):89-100. doi: 10.1063/1.1757436.
4
Proceedings of the Second Workshop on Theory meets Industry (Erwin-Schrödinger-Institute (ESI), Vienna, Austria, 12-14 June 2007).第二届理论与产业研讨会会议录(2007年6月12日至14日,奥地利维也纳埃尔温·薛定谔研究所)
J Phys Condens Matter. 2008 Feb 13;20(6):060301. doi: 10.1088/0953-8984/20/06/060301. Epub 2008 Jan 24.
5
Differentiating the Yield of Chemical Reactions Using Parameters in First-Order Kinetic Equations to Identify Elementary Steps That Control the Reactivity from Complicated Reaction Path Networks.利用一级动力学方程中的参数区分化学反应产率,以从复杂反应路径网络中识别控制反应活性的基元步骤。
J Phys Chem A. 2024 Apr 11;128(14):2883-2890. doi: 10.1021/acs.jpca.4c00204. Epub 2024 Apr 2.
6
Review of computer simulations of isotope effects on biochemical reactions: From the Bigeleisen equation to Feynman's path integral.同位素对生化反应影响的计算机模拟综述:从比格莱森方程到费曼路径积分
Biochim Biophys Acta. 2015 Nov;1854(11):1782-94. doi: 10.1016/j.bbapap.2015.04.021. Epub 2015 Apr 30.
7
Kinetic products in coordination networks: ab initio X-ray powder diffraction analysis.配合物网络中的动力学产物:从头算 X 射线粉末衍射分析。
Acc Chem Res. 2013 Feb 19;46(2):493-505. doi: 10.1021/ar300212v. Epub 2012 Dec 19.
8
Kinetics of Electrocatalytic Reactions from First-Principles: A Critical Comparison with the Ab Initio Thermodynamics Approach.从第一性原理看电催化反应动力学:与从头热力学方法的批判性比较。
Acc Chem Res. 2017 May 16;50(5):1240-1247. doi: 10.1021/acs.accounts.7b00077. Epub 2017 May 2.
9
First principles reaction discovery: from the Schrodinger equation to experimental prediction for methane pyrolysis.第一性原理反应发现:从薛定谔方程到甲烷热解的实验预测
Chem Sci. 2023 Jun 9;14(27):7447-7464. doi: 10.1039/d3sc01202f. eCollection 2023 Jul 12.
10
Automated Discovery and Refinement of Reactive Molecular Dynamics Pathways.反应性分子动力学途径的自动发现与优化
J Chem Theory Comput. 2016 Feb 9;12(2):638-49. doi: 10.1021/acs.jctc.5b00830. Epub 2016 Jan 19.

引用本文的文献

1
Microkinetic Assessment of Ligand-Exchanging Catalytic Cycles.配体交换催化循环的微观动力学评估
ACS Catal. 2025 Mar 6;15(6):4739-4745. doi: 10.1021/acscatal.5c00348. eCollection 2025 Mar 21.
2
Tetraborylation of -Benzynes Generated by the Masamune-Bergman Cyclization through Reaction Design Based on the Reaction Path Network.基于反应路径网络的反应设计通过Masamune-Bergman环化生成的-苯炔的四硼化反应
JACS Au. 2024 Jun 20;4(7):2578-2584. doi: 10.1021/jacsau.4c00302. eCollection 2024 Jul 22.
3
Toward three-dimensionally ordered nanoporous graphene materials: template synthesis, structure, and applications.
迈向三维有序纳米多孔石墨烯材料:模板合成、结构及应用
Chem Sci. 2023 Dec 26;15(6):1953-1965. doi: 10.1039/d3sc05022j. eCollection 2024 Feb 7.
4
Quantum chemical calculations for reaction prediction in the development of synthetic methodologies.用于合成方法开发中反应预测的量子化学计算。
Chem Sci. 2023 Sep 30;14(42):11601-11616. doi: 10.1039/d3sc03319h. eCollection 2023 Nov 1.
5
Challenges for Kinetics Predictions via Neural Network Potentials: A Wilkinson's Catalyst Case.通过神经网络势进行动力学预测的挑战:威尔金森催化剂案例。
Molecules. 2023 May 31;28(11):4477. doi: 10.3390/molecules28114477.