Jeon Donghyun, Kang Yuna, Lee Solji, Choi Sehyun, Sung Yeonjun, Lee Tae-Ho, Kim Changsoo
Plant Computational Genomics Laboratory, Department of Science in Smart Agriculture Systems, Chungnam National University, Daejeon, Republic of Korea.
Plant Computational Genomics Laboratory, Department of Crop Science, Chungnam National University, Daejeon, Republic of Korea.
Front Plant Sci. 2023 Jan 19;14:1092584. doi: 10.3389/fpls.2023.1092584. eCollection 2023.
As the world's population grows and food needs diversification, the demand for cereals and horticultural crops with beneficial traits increases. In order to meet a variety of demands, suitable cultivars and innovative breeding methods need to be developed. Breeding methods have changed over time following the advance of genetics. With the advent of new sequencing technology in the early 21st century, predictive breeding, such as genomic selection (GS), emerged when large-scale genomic information became available. GS shows good predictive ability for the selection of individuals with traits of interest even for quantitative traits by using various types of the whole genome-scanning markers, breaking away from the limitations of marker-assisted selection (MAS). In the current review, we briefly describe the history of breeding techniques, each breeding method, various statistical models applied to GS and methods to increase the GS efficiency. Consequently, we intend to propose and define the term digital breeding through this review article. Digital breeding is to develop a predictive breeding methods such as GS at a higher level, aiming to minimize human intervention by automatically proceeding breeding design, propagating breeding populations, and to make selections in consideration of various environments, climates, and topography during the breeding process. We also classified the phases of digital breeding based on the technologies and methods applied to each phase. This review paper will provide an understanding and a direction for the final evolution of plant breeding in the future.
随着世界人口增长以及食物需求多样化,对具有有益性状的谷物和园艺作物的需求不断增加。为了满足各种需求,需要培育合适的品种并开发创新的育种方法。随着遗传学的发展,育种方法也随时间发生了变化。21世纪初新测序技术出现后,当大规模基因组信息可用时,诸如基因组选择(GS)等预测性育种应运而生。GS通过使用各种类型的全基因组扫描标记,即使对于数量性状,在选择具有感兴趣性状的个体方面也显示出良好的预测能力,突破了标记辅助选择(MAS)的局限性。在本综述中,我们简要描述了育种技术的历史、每种育种方法、应用于GS的各种统计模型以及提高GS效率的方法。因此,我们打算通过这篇综述文章提出并定义“数字育种”这一术语。数字育种是要在更高水平上开发诸如GS之类的预测性育种方法,旨在通过自动进行育种设计、繁殖育种群体来尽量减少人为干预,并在育种过程中考虑各种环境、气候和地形进行选择。我们还根据应用于每个阶段的技术和方法对数字育种的阶段进行了分类。这篇综述文章将为未来植物育种的最终发展提供理解和方向。