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新种、新种和新种,从根际土壤中分离得到。

sp. nov., sp. nov. and sp. nov., isolated from rhizosphere soils.

作者信息

Kim Jiyoun, Chhetri Geeta, Kim Inhyup, So Yoonseop, Seo Taegun

机构信息

Department of Life Science, Dongguk University-Seoul, Goyang 10326, South Korea.

出版信息

Int J Syst Evol Microbiol. 2022 Dec;72(12). doi: 10.1099/ijsem.0.005640.

Abstract

Members of the genus are well known for their metabolic versatility and great application potential in plant growth promotion. Three novel bacterial strains, designated N4, JC52 and PR3, were isolated from rhizosphere soils and characterized by using a polyphasic taxonomic approach. The 16S rRNA gene sequence phylogenetic and phylogenomic analysis revealed that the three strains belonged to the genus and formed three independent branches distinct from all reference strains. The results of DNA-DNA hybridization (DDH) and average nucleotide identity (ANI) analyses between the three strains and their relatives further demonstrated that the three strains represented different novel genospecies. Strain N4 exhibited the highest similarity, ANI and digital DDH values with DSM 18201 (99.0/87.5/33.9 %) and DS80 (97.2/-/18.2±1.2 %). Values for JC52 with NBRC 15382 were 96.9, 73.3 and 19.6 %, and with JCM 16352 were 96.1, 72.1 and 19.3 %. Values for PR3 with DCY89 were 98.2, - and 31.8±1.5 %, with ASM318225v1 were 97.8, 83.3 and 26.7 %, and with NBRC 15729 were 97.6, 75.7 and 20.4 %. Cells of the three novel bacterial strains were Gram-positive, spore-forming, motile and rod-shaped. The novel species contained anteiso-C and MK-7 as the predominant fatty acid and menaquinone, respectively. The novel strains have numerous similar known clusters of non-ribosomal peptide synthetases, siderophores, lanthipeptide, lassopeptide-like bacillibactin, paeninodin and polyketide-like chejuenolide A/B lankacidin C. Based on the distinct morphological, physiological, chemotaxonomic and phylogenetic differences from their closest phylogenetic neighbours, we propose that strains N4, JC52 and PR3 represent novel species of the genus , with the names sp. nov. (=KACC 19717=JCM 32775), sp. nov. (=KACC 21221=NBRC 113867) and sp. nov. (=KACC 21455=NBRC 114385), respectively.

摘要

该属成员以其代谢多样性和在促进植物生长方面的巨大应用潜力而闻名。从根际土壤中分离出三株新的细菌菌株,分别命名为N4、JC52和PR3,并采用多相分类法对其进行了表征。16S rRNA基因序列系统发育和系统基因组分析表明,这三株菌株属于该属,并形成了与所有参考菌株不同的三个独立分支。这三株菌株与其亲缘菌株之间的DNA-DNA杂交(DDH)和平均核苷酸同一性(ANI)分析结果进一步表明,这三株菌株代表不同的新基因种。菌株N4与嗜盐芽孢杆菌DSM 18201(99.0/87.5/33.9 %)和嗜碱芽孢杆菌DS80(97.2/-/18.2±1.2 %)表现出最高的相似性、ANI和数字DDH值。JC52与枯草芽孢杆菌NBRC 15382的值分别为96.9、73.3和19.6 %,与解淀粉芽孢杆菌JCM 16352的值分别为96.1、72.1和19.3 %。PR3与短芽孢杆菌DCY89的值分别为98.2、-和31.8±1.5 %,与类芽孢杆菌ASM318225v1的值分别为97.8、83.3和26.7 %,与地衣芽孢杆菌NBRC 15729的值分别为97.6、75.7和20.4 %。这三株新细菌菌株的细胞为革兰氏阳性、产芽孢、运动型且呈杆状。该新物种分别以anteiso-C和MK-7作为主要脂肪酸和甲基萘醌。这些新菌株具有许多类似的已知非核糖体肽合成酶、铁载体、羊毛硫肽、类羊毛硫肽杆菌素、芍药色素和类聚酮化合物车菊内酯A/B兰卡杀菌素C的簇。基于与其最接近的系统发育邻居在形态、生理、化学分类和系统发育上的明显差异,我们提议菌株N4、JC52和PR3分别代表该属的新物种,命名为嗜盐芽孢杆菌新种(=KACC 19717=JCM 32775)、枯草芽孢杆菌新种(=KACC 21221=NBRC 113867)和嗜碱芽孢杆菌新种(=KACC 21455=NBRC 114385)。

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