Zhang Hong Xia, Gu Chun Tao
College of Life Sciences, Northeast Agricultural University, Harbin 150030, PR China.
Int J Syst Evol Microbiol. 2022 Dec;72(12). doi: 10.1099/ijsem.0.005661.
Two Gram-stain-positive bacterial strains, designated 213-9(3) and 30-1(2), were isolated from traditional Chinese pickle, and were characterized using a polyphasic taxonomic approach. Results of 16S rRNA gene sequence analysis indicated that strain 213-9(3) was most closely related to TMW 1.1424, 151-2B and 220-4, having 99.7-99.9 % 16S rRNA gene sequence similarities; strain 30-1(2) was most closely related to 247-4, with 99.4 % 16S rRNA gene sequence similarity. Strain 213-9(3) shared the highest (93.9 %), (99.3 %) and concatenated and (97.5 %) sequence similarities to TMW 1.1424. Strain 30-1(2) had the highest (82.4 %), (95.5 %) and concatenated and (91.2 %) sequence similarities to 247-4. The phylogenetic relationships based on concatenated and sequences and whole genome sequences were identical to those based on 16S rRNA gene sequences. Strain 213-9(3) exhibited the highest average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values (92.7 and 48.8 %, respectively) to DSM 22467. Strain 30-1(2) had the highest ANI (84.4 %) and dDDH (32.8 %) values with 247-4. Acid production from d-galactose, d-glucose, d-mannose, -acetyl--glucosaminidase, arbutin, salicin, cellobiose, maltose, gentiobiose, d-tagatose and gluconate, hydrolysis of aesculin, and activity of cystine arylamidase could differentiate strain 213-9(3) from DSM 22467. Acid production from l-arabinose, d-ribose, d-xylose and d-galactose, and activity of alkaline phosphatase, esterase (C4), -mannosidase and -fucosidase could differentiate strain 30-1(2) from 247-4. Based upon the data obtained in the present study, two novel species, sp. nov. and sp. nov., are proposed and the type strains are 213-9(3) (=CCM 9241=CCTCC AB 2022115=JCM 35554) and 30-1(2) (=CCM 9240=CCTCC AB 2022114=JCM 35553), respectively.
从中国传统泡菜中分离出两株革兰氏阳性细菌菌株,分别命名为213 - 9(3)和30 - 1(2),并采用多相分类方法对其进行了特征描述。16S rRNA基因序列分析结果表明,菌株213 - 9(3)与TMW 1.1424、151 - 2B和220 - 4关系最为密切,16S rRNA基因序列相似性为99.7 - 99.9%;菌株30 - 1(2)与247 - 4关系最为密切,16S rRNA基因序列相似性为99.4%。菌株213 - 9(3)与TMW 1.1424的16S rRNA、rpoB和gyrB串联序列以及全基因组序列的相似性最高,分别为93.9%、99.3%和97.5%。菌株30 - 1(2)与247 - 4的16S rRNA、rpoB和gyrB串联序列以及全基因组序列的相似性最高,分别为82.4%、95.5%和91.2%。基于rpoB和gyrB串联序列以及全基因组序列的系统发育关系与基于16S rRNA基因序列的系统发育关系一致。菌株213 - 9(3)与DSM 22467的平均核苷酸一致性(ANI)和数字DNA - DNA杂交(dDDH)值最高,分别为92.7%和48.8%。菌株30 - 1(2)与247 - 4的ANI值(84.4%)和dDDH值(32.8%)最高。由d - 半乳糖、d - 葡萄糖、d - 甘露糖、α - 乙酰 - β - 葡萄糖苷酶、熊果苷、水杨苷、纤维二糖、麦芽糖、龙胆二糖、d - 塔格糖和葡萄糖酸盐产酸、七叶苷水解以及胱氨酸芳基酰胺酶活性可将菌株213 - 9(3)与DSM 22467区分开来。由l - 阿拉伯糖、d - 核糖、d - 木糖和d - 半乳糖产酸以及碱性磷酸酶、酯酶(C4)、α - 甘露糖苷酶和α - 岩藻糖苷酶活性可将菌株30 - 1(2)与247 - 4区分开来。基于本研究获得的数据,提出了两个新物种,即新种和新种,其模式菌株分别为213 - 9(3)(=CCM 9241 = CCTCC AB 2022115 = JCM 35554)和30 - 1(2)(=CCM 9240 = CCTCC AB 2022114 = JCM 35553)。