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在 L. 中进行应激相关甘油醛酶基因的全基因组鉴定和功能特征分析

Genome-Wide Identification and Functional Characterization of Stress Related Glyoxalase Genes in L.

机构信息

The Key Laboratory of Biology and Genetic Improvement of Oil Crops, The Ministry of Agriculture and Rural Affairs of the PRC, Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences, Wuhan 430062, China.

出版信息

Int J Mol Sci. 2023 Jan 21;24(3):2130. doi: 10.3390/ijms24032130.

Abstract

Rapeseed ( L.) is not only one of the most important oil crops in the world, but it is also an important vegetable crop with a high value nutrients and metabolites. However, rapeseed is often severely damaged by adverse stresses, such as low temperature, pathogen infection and so on. Glyoxalase I (GLYI) and glyoxalase II (GLYII) are two enzymes responsible for the detoxification of a cytotoxic metabolite methylglyoxal (MG) into the nontoxic S-D-lactoylglutathione, which plays crucial roles in stress tolerance in plants. Considering the important roles of glyoxalases, the gene families have been analyzed in higher plans, such as rice, soybean and Chinese cabbage; however, little is known about the presence, distribution, localizations and expression of glyoxalase genes in rapeseed, a young allotetraploid. In this study, a total of 35 and 30 genes were identified in the genome and were clustered into six and eight subfamilies, respectively. The classification, chromosomal distribution, gene structure and conserved motif were identified or predicted. BnaGLYI and BnaGLYII proteins were mainly localized in chloroplast and cytoplasm. By using publicly available RNA-seq data and a quantitative real-time PCR analysis (qRT-PCR), the expression profiling of these genes of different tissues was demonstrated in different developmental stages as well as under stresses. The results indicated that their expression profiles varied among different tissues. Some members are highly expressed in specific tissues, and expressed in flowers and germinating seed. At the same time, the two genes were significantly up-regulated under heat, cold and freezing stresses. Notably, a number of genes showed responses to infection. Overexpression of in seedlings confirmed that this gene conferred freezing tolerance. This study provides insight of the and gene families in allotetraploid and their roles in stress resistance, and important information and gene resources for developing stress resistant vegetable and rapeseed oil.

摘要

油菜( L.)不仅是世界上最重要的油料作物之一,而且还是一种具有高营养价值营养物质和代谢物的重要蔬菜作物。然而,油菜经常受到低温、病原体感染等不利压力的严重破坏。 醛缩酶 I(GLYI)和醛缩酶 II(GLYII)是负责将细胞毒性代谢物甲基乙二醛(MG)解毒为无毒 S-D-乳酰谷胱甘肽的两种酶,在植物的应激耐受中起着至关重要的作用。考虑到醛缩酶的重要作用,已在高等植物中分析了基因家族,如水稻、大豆和白菜;然而,对于油菜这种年轻的异源四倍体,关于其醛缩酶基因的存在、分布、定位和表达知之甚少。在这项研究中,总共在油菜基因组中鉴定了 35 个和 30 个基因,并分别聚类为六个和八个亚家族。鉴定或预测了分类、染色体分布、基因结构和保守基序。BnaGLYI 和 BnaGLYII 蛋白主要定位于叶绿体和细胞质中。通过使用公开可用的 RNA-seq 数据和定量实时 PCR 分析(qRT-PCR),在不同发育阶段以及在胁迫下展示了这些基因在不同组织中的表达谱。结果表明,它们的表达谱在不同组织之间存在差异。一些成员在特定组织中高度表达,和在花和萌发种子中表达。同时,这两个基因在热、冷和冷冻胁迫下显著上调。值得注意的是,许多基因对 感染有反应。在幼苗中过表达证实该基因赋予了抗冻性。本研究为异源四倍体油菜中 基因家族及其在抗逆性中的作用提供了深入了解,为开发抗逆性蔬菜和油菜提供了重要信息和基因资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c69f/9916435/cc85ca556b9e/ijms-24-02130-g001.jpg

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