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本文引用的文献

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An optrode array for spatiotemporally-precise large-scale optogenetic stimulation of deep cortical layers in non-human primates.一种用于非人类灵长类动物的深层皮质层的时空精确的大规模光遗传刺激的光探头阵列。
Commun Biol. 2024 Mar 14;7(1):329. doi: 10.1038/s42003-024-05984-2.
2
Computational microscopy for fast widefield deep-tissue fluorescence imaging using a commercial dual-cannula probe.使用商用双套管探头进行快速宽场深层组织荧光成像的计算显微镜技术。
Opt Contin. 2022 Sep 15;1(9):2091-2099. doi: 10.1364/optcon.469219.
3
Scan-less machine-learning-enabled incoherent microscopy for minimally-invasive deep-brain imaging.无扫描机器学习功能的非相干显微镜用于微创大脑深部成像。
Opt Express. 2022 Jan 17;30(2):1546-1554. doi: 10.1364/OE.446241.
4
Needle-based deep-neural-network camera.基于针的深度神经网络相机。
Appl Opt. 2021 Apr 1;60(10):B135-B140. doi: 10.1364/AO.415059.
5
3D computational cannula fluorescence microscopy enabled by artificial neural networks.基于人工神经网络的三维计算导管荧光显微镜。
Opt Express. 2020 Oct 26;28(22):32342-32348. doi: 10.1364/OE.403238.
6
Miniscope3D: optimized single-shot miniature 3D fluorescence microscopy.微型3D显微镜:优化的单次微型3D荧光显微镜
Light Sci Appl. 2020 Oct 2;9:171. doi: 10.1038/s41377-020-00403-7. eCollection 2020.
7
Deciphering Brain Function by Miniaturized Fluorescence Microscopy in Freely Behaving Animals.通过自由活动动物体内的小型荧光显微镜解析脑功能
Front Neurosci. 2020 Aug 11;14:819. doi: 10.3389/fnins.2020.00819. eCollection 2020.
8
Miniature Fluorescence Microscopy for Imaging Brain Activity in Freely-Behaving Animals.微型荧光显微镜用于在自由活动的动物中成像大脑活动。
Neurosci Bull. 2020 Oct;36(10):1182-1190. doi: 10.1007/s12264-020-00561-z. Epub 2020 Aug 14.
9
An aspherical microlens assembly for deep brain fluorescence microendoscopy.用于深部脑荧光显微内镜的非球面微透镜组件。
Biochem Biophys Res Commun. 2020 Jun 25;527(2):447-452. doi: 10.1016/j.bbrc.2020.04.009. Epub 2020 Apr 23.
10
Computational cannula microscopy of neurons using neural networks.使用神经网络进行神经元的计算管显微镜检查。
Opt Lett. 2020 Apr 1;45(7):2111-2114. doi: 10.1364/OL.387496.

通过计算光导纤维阵列显微镜克服微内窥镜中的视场到直径的权衡。

Overcoming the field-of-view to diameter trade-off in microendoscopy via computational optrode-array microscopy.

出版信息

Opt Express. 2023 Feb 27;31(5):7505-7514. doi: 10.1364/OE.478314.

DOI:10.1364/OE.478314
PMID:36859879
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10018790/
Abstract

High-resolution microscopy of deep tissue with large field-of-view (FOV) is critical for elucidating organization of cellular structures in plant biology. Microscopy with an implanted probe offers an effective solution. However, there exists a fundamental trade-off between the FOV and probe diameter arising from aberrations inherent in conventional imaging optics (typically, FOV < 30% of diameter). Here, we demonstrate the use of microfabricated non-imaging probes (optrodes) that when combined with a trained machine-learning algorithm is able to achieve FOV of 1x to 5x the probe diameter. Further increase in FOV is achieved by using multiple optrodes in parallel. With a 1 × 2 optrode array, we demonstrate imaging of fluorescent beads (including 30 FPS video), stained plant stem sections and stained living stems. Our demonstration lays the foundation for fast, high-resolution microscopy with large FOV in deep tissue via microfabricated non-imaging probes and advanced machine learning.

摘要

高分辨率显微镜观察深层组织并获得大视场(FOV)对于阐明植物生物学中细胞结构的组织至关重要。植入探头的显微镜提供了有效的解决方案。然而,由于传统成像光学固有的像差,FOV 和探头直径之间存在基本的权衡(通常,FOV <直径的 30%)。在这里,我们展示了使用微加工的非成像探头(optrodes)的情况,当与经过训练的机器学习算法结合使用时,能够实现 1x 到 5x 探头直径的 FOV。通过并行使用多个 optrodes 可以进一步增加 FOV。使用 1x2 optrode 阵列,我们演示了荧光珠(包括 30 FPS 视频)、染色植物茎段和染色活茎的成像。我们的演示为通过微加工的非成像探头和先进的机器学习在深层组织中实现快速、高分辨率的大视场显微镜奠定了基础。