Gupta Prateek, Maharaj Tegan, Weiss Martin, Rahaman Nasim, Alsdurf Hannah, Minoyan Nanor, Harnois-Leblanc Soren, Merckx Joanna, Williams Andrew, Schmidt Victor, St-Charles Pierre-Luc, Patel Akshay, Zhang Yang, Buckeridge David L, Pal Christopher, Schölkopf Bernhard, Bengio Yoshua
Montréal Institute of Learning Algorithms (Mila), Montréal, Québec, Canada.
The Alan Turing Institute, London, United Kingdom.
PLOS Digit Health. 2023 Mar 13;2(3):e0000199. doi: 10.1371/journal.pdig.0000199. eCollection 2023 Mar.
The COVID-19 pandemic has spurred an unprecedented demand for interventions that can reduce disease spread without excessively restricting daily activity, given negative impacts on mental health and economic outcomes. Digital contact tracing (DCT) apps have emerged as a component of the epidemic management toolkit. Existing DCT apps typically recommend quarantine to all digitally-recorded contacts of test-confirmed cases. Over-reliance on testing may, however, impede the effectiveness of such apps, since by the time cases are confirmed through testing, onward transmissions are likely to have occurred. Furthermore, most cases are infectious over a short period; only a subset of their contacts are likely to become infected. These apps do not fully utilize data sources to base their predictions of transmission risk during an encounter, leading to recommendations of quarantine to many uninfected people and associated slowdowns in economic activity. This phenomenon, commonly termed as "pingdemic," may additionally contribute to reduced compliance to public health measures. In this work, we propose a novel DCT framework, Proactive Contact Tracing (PCT), which uses multiple sources of information (e.g. self-reported symptoms, received messages from contacts) to estimate app users' infectiousness histories and provide behavioral recommendations. PCT methods are by design proactive, predicting spread before it occurs. We present an interpretable instance of this framework, the Rule-based PCT algorithm, designed via a multi-disciplinary collaboration among epidemiologists, computer scientists, and behavior experts. Finally, we develop an agent-based model that allows us to compare different DCT methods and evaluate their performance in negotiating the trade-off between epidemic control and restricting population mobility. Performing extensive sensitivity analysis across user behavior, public health policy, and virological parameters, we compare Rule-based PCT to i) binary contact tracing (BCT), which exclusively relies on test results and recommends a fixed-duration quarantine, and ii) household quarantine (HQ). Our results suggest that both BCT and Rule-based PCT improve upon HQ, however, Rule-based PCT is more efficient at controlling spread of disease than BCT across a range of scenarios. In terms of cost-effectiveness, we show that Rule-based PCT pareto-dominates BCT, as demonstrated by a decrease in Disability Adjusted Life Years, as well as Temporary Productivity Loss. Overall, we find that Rule-based PCT outperforms existing approaches across a varying range of parameters. By leveraging anonymized infectiousness estimates received from digitally-recorded contacts, PCT is able to notify potentially infected users earlier than BCT methods and prevent onward transmissions. Our results suggest that PCT-based applications could be a useful tool in managing future epidemics.
鉴于对心理健康和经济成果的负面影响,新冠疫情引发了对能够减少疾病传播且不过度限制日常活动的干预措施的前所未有的需求。数字接触追踪(DCT)应用程序已成为疫情管理工具包的一个组成部分。现有的DCT应用程序通常会向所有经检测确诊病例的数字记录接触者推荐隔离措施。然而,过度依赖检测可能会妨碍此类应用程序的有效性,因为等到通过检测确诊病例时,病毒很可能已经发生了进一步传播。此外,大多数病例在短时间内具有传染性;只有一部分接触者可能会被感染。这些应用程序没有充分利用数据源来预测接触期间的传播风险,导致向许多未感染者推荐隔离措施,并导致经济活动放缓。这种通常被称为“pingdemic”的现象,可能还会导致对公共卫生措施的依从性降低。在这项工作中,我们提出了一种新颖的DCT框架,即主动接触追踪(PCT),它使用多种信息来源(例如自我报告的症状、来自接触者的消息)来估计应用程序用户的感染史并提供行为建议。PCT方法在设计上是主动的,能够在传播发生之前进行预测。我们展示了这个框架的一个可解释实例,即基于规则的PCT算法,它是通过流行病学家、计算机科学家和行为专家之间的多学科合作设计的。最后,我们开发了一个基于代理的模型,使我们能够比较不同的DCT方法,并评估它们在权衡疫情控制和限制人口流动之间的表现。通过对用户行为、公共卫生政策和病毒学参数进行广泛的敏感性分析,我们将基于规则的PCT与以下两种方法进行了比较:i)二元接触追踪(BCT),它完全依赖检测结果并推荐固定时长的隔离措施;ii)家庭隔离(HQ)。我们的结果表明,BCT和基于规则的PCT都比HQ有所改进,然而,在一系列场景中,基于规则的PCT在控制疾病传播方面比BCT更有效。在成本效益方面我们表明,基于规则的PCT在帕累托意义上优于BCT,这体现在伤残调整生命年以及临时生产力损失的减少上。总体而言,我们发现基于规则的PCT在各种参数范围内都优于现有方法。通过利用从数字记录接触者那里获得的匿名感染估计值,PCT能够比BCT方法更早地通知潜在感染用户并防止进一步传播。我们的结果表明,基于PCT的应用程序可能是管理未来疫情的有用工具。