Cardiff University, Cardiff, UK.
Soc Stud Sci. 2023 Jun;53(3):358-378. doi: 10.1177/03063127231154863. Epub 2023 Mar 15.
In genomics, the clinical application of Next Generation Sequencing technologies (such as Whole Genome or Exome Sequencing) has attracted considerable attention from UK policymakers, interested in the benefits such technologies could bring the National Health Service. However, this boosterism plays little attention to the challenges raised by a kind of result known as a Variant of Uncertain Significance, or VUS, which require clinical geneticists and related colleagues to classify ambiguous genomic variants as 'benign' or 'pathogenic'. With a rigorous analysis based on data gathered at 290 clinical meetings over a two-year period, this paper presents the first ethnographic account of decision-making around NGS technology in a NHS clinical genomics service, broadening our understanding of the role formal criteria play in the classification of VUS. Drawing on Stefan Timmermans' concept of 'reflexive standardisation' to explore the way in which clinical genetics staff classify such variants this paper explores the application of a set of criteria drafted by the American College of Medical Genetics and Genomics, highlighting the flexible way in which various resources - variant databases, computer programmes, the research literature - are drawn on to reach a decision. A crucial insight is how professionals' perception of, and trust in, the clinical practice at other genomics centres in the NHS, shapes their own application of criteria and the classification of a VUS as either benign or pathogenic.
在基因组学领域,下一代测序技术(如全基因组或外显子组测序)的临床应用引起了英国政策制定者的极大关注,他们对这些技术能给国民保健制度带来的益处很感兴趣。然而,这种大肆宣传却很少关注到一种被称为意义不明的变异(Variant of Uncertain Significance,VUS)的结果所带来的挑战,这些结果需要临床遗传学家和相关同事将模棱两可的基因组变异分类为“良性”或“致病性”。本文通过对两年内 290 次临床会议收集的数据进行严格分析,首次从民族志角度描述了英国国民保健制度临床基因组学服务中对 NGS 技术的决策过程,拓宽了我们对正式标准在 VUS 分类中所起作用的理解。本文借鉴斯特凡·蒂默曼斯(Stefan Timmermans)的“反思标准化”概念,探讨了临床遗传学工作人员对这类变异进行分类的方式,探讨了美国医学遗传学与基因组学学院起草的一套标准的应用,强调了各种资源(变异数据库、计算机程序、研究文献)在决策中的灵活应用。一个关键的见解是,专业人员对国民保健制度中其他基因组学中心的临床实践的看法和信任如何影响他们自己对标准的应用以及将 VUS 分类为良性或致病性。