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作为一种预后生物标志物及其与肝癌免疫浸润的关系。

as a Prognostic Biomarker and Its Association with Immune Infiltration in Hepatocellular Carcinoma.

机构信息

Department of Oncology, The Second Affiliated Hospital of Nanchang University, Nanchang 330006, China.

Jiangxi Key Laboratory of Clinical and Translational Cancer Research, Nanchang 330006, China.

出版信息

Curr Oncol. 2023 Feb 22;30(3):2653-2672. doi: 10.3390/curroncol30030202.

Abstract

The Chemokine-like factor ()-like MARVEL transmembrane domain-containing () family, comprising nine members, is involved in the tumorigenesis and progression of various cancers. However, the expression profiles and clinical significance of family members in hepatocellular carcinoma (HCC) are not fully clarified. In this study, the RNA-sequencing and clinical data were downloaded from The Cancer Genome Atlas (TCGA) databases. The Kaplan-Meier method and the Cox proportional hazards regression analysis were used to evaluate the prognostic significance of family members. Single-sample gene set enrichment analysis (ssGSEA) and ESTIMATE algorithms were employed to explore the relationship between family genes and the tumor microenvironment in HCC. Finally, the prognostic family gene expression was further validated by quantitative real-time polymerase chain reaction (qRT-PCR) and immunohistochemical (IHC) staining in clinical HCC tissue specimens. The results indicated that, compared with normal tissues, the expression of , , , , , and were significantly upregulated in HCC, while the expression of , , and were significantly downregulated in HCC. Univariate and multivariate Cox regression analysis demonstrated that was an independent prognostic biomarker for the overall survival (OS) of HCC patients. In HCC, the expression of was found to be correlated with immune cell infiltration, immune-related functions, and immune checkpoint genes. The qRT-PCR and IHC confirmed that was highly expressed in HCC. Overall, this research suggested that is involved in immune cell infiltration and may serve as a critical prognostic biomarker, which provides new light on the therapeutics for HCC.

摘要

趋化因子样因子 ()-样跨膜结构域包含 () 家族,由九个成员组成,参与多种癌症的发生和发展。然而, 家族成员在肝细胞癌 (HCC) 中的表达谱和临床意义尚不完全清楚。本研究从癌症基因组图谱 (TCGA) 数据库下载 RNA 测序和临床数据。Kaplan-Meier 方法和 Cox 比例风险回归分析用于评估 家族成员的预后意义。单样本基因集富集分析 (ssGSEA) 和 ESTIMATE 算法用于探索 HCC 中 家族基因与肿瘤微环境的关系。最后,通过定量实时聚合酶链反应 (qRT-PCR) 和临床 HCC 组织标本的免疫组织化学 (IHC) 染色进一步验证预后 家族基因表达。结果表明,与正常组织相比,HCC 中 、 、 、 、 和 的表达显著上调,而 、 、 和 的表达显著下调。单因素和多因素 Cox 回归分析表明, 是 HCC 患者总生存期 (OS) 的独立预后生物标志物。在 HCC 中, 表达与免疫细胞浸润、免疫相关功能和免疫检查点基因相关。qRT-PCR 和 IHC 证实 HCC 中 高表达。总的来说,这项研究表明 参与免疫细胞浸润,可能是一个关键的预后生物标志物,为 HCC 的治疗提供了新的思路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0c60/10047849/31f932789112/curroncol-30-00202-g001.jpg

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