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枣椰树黑焦病病原体——一种真菌病原体的分泌蛋白组的计算机模拟特征分析

In Silico Characterization of the Secretome of the Fungal Pathogen , the Causal Agent of Date Palm Black Scorch Disease.

作者信息

Chellappan Biju Vadakkemukadiyil, El-Ganainy Sherif Mohamed, Alrajeh Hind Salih, Al-Sheikh Hashem

机构信息

Department of Biological Sciences, College of Science, King Faisal University, P.O. Box 420, Al-Ahsa 31982, Saudi Arabia.

Department of Arid Land Agriculture, College of Agriculture and Food Sciences, King Faisal University, P.O. Box 420, Al-Ahsa 31982, Saudi Arabia.

出版信息

J Fungi (Basel). 2023 Feb 27;9(3):303. doi: 10.3390/jof9030303.

Abstract

The black scorch disease of date palm caused by is a serious threat to the cultivation and productivity of date palm in Arabian Peninsula. The virulence factors that contribute to pathogenicity of have not been identified yet. In the present study, using bioinformatics approach, secretory proteins of were identified and functionally characterized. A total of 197 putative secretory proteins were identified, of which 74 were identified as enzymes for carbohydrate degradation (CAZymes), 25 were proteases, and 47 were predicted as putative effectors. Within the CAZymes, 50 cell wall-degrading enzymes, potentially to degrade cell wall components such as cellulose, hemicellulose, lignin, and pectin, were identified. Of the 47 putative effectors, 34 possessed at least one functional domain. The secretome of was compared to the predicted secretome of five closely related species (, , , , and ) and identified species specific CAZymes and putative effector genes in , providing a valuable resource for the research aimed at understanding the molecular mechanism underlying the pathogenicity of on Date palm.

摘要

由[病原体名称未给出]引起的枣椰树黑焦病对阿拉伯半岛枣椰树的种植和生产力构成严重威胁。尚未确定导致[病原体名称未给出]致病性的毒力因子。在本研究中,采用生物信息学方法,对[病原体名称未给出]的分泌蛋白进行了鉴定和功能表征。共鉴定出197种假定的分泌蛋白,其中74种被鉴定为碳水化合物降解酶(CAZymes),25种为蛋白酶,47种被预测为假定效应子。在CAZymes中,鉴定出50种细胞壁降解酶,可能降解纤维素、半纤维素、木质素和果胶等细胞壁成分。在47种假定效应子中,34种具有至少一个功能域。将[病原体名称未给出]的分泌组与五个密切相关物种([物种名称未给出]、[物种名称未给出]、[物种名称未给出]、[物种名称未给出]和[物种名称未给出])的预测分泌组进行比较,鉴定出[病原体名称未给出]中物种特异性的CAZymes和假定效应子基因,为旨在了解[病原体名称未给出]对枣椰树致病性的分子机制的研究提供了宝贵资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b483/10051545/5f59e0a41a45/jof-09-00303-g001.jpg

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