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严重急性呼吸综合征冠状病毒2(SARS-CoV-2)进化出的变体优化了与细胞糖萼的结合。

SARS-CoV-2 evolved variants optimize binding to cellular glycocalyx.

作者信息

Kim Sang Hoon, Kearns Fiona L, Rosenfeld Mia A, Votapka Lane, Casalino Lorenzo, Papanikolas Micah, Amaro Rommie E, Freeman Ronit

机构信息

Department of Applied Physical Sciences, University of North Carolina - Chapel Hill, 1112 Murray Hall, CB#3050, Chapel Hill, NC 27599-2100, USA.

Department of Chemistry and Biochemistry, University of California, San Diego, 4238 Urey Hall, MC-0340, La Jolla, CA 92093-0340, USA.

出版信息

Cell Rep Phys Sci. 2023 Apr 19;4(4):101346. doi: 10.1016/j.xcrp.2023.101346. Epub 2023 Apr 7.

Abstract

Viral variants of concern continue to arise for SARS-CoV-2, potentially impacting both methods for detection and mechanisms of action. Here, we investigate the effect of an evolving spike positive charge in SARS-CoV-2 variants and subsequent interactions with heparan sulfate and the angiotensin converting enzyme 2 (ACE2) in the glycocalyx. We show that the positively charged Omicron variant evolved enhanced binding rates to the negatively charged glycocalyx. Moreover, we discover that while the Omicron spike-ACE2 affinity is comparable to that of the Delta variant, the Omicron spike interactions with heparan sulfate are significantly enhanced, giving rise to a ternary complex of spike-heparan sulfate-ACE2 with a large proportion of double-bound and triple-bound ACE2. Our findings suggest that SARS-CoV-2 variants evolve to be more dependent on heparan sulfate in viral attachment and infection. This discovery enables us to engineer a second-generation lateral-flow test strip that harnesses both heparin and ACE2 to reliably detect all variants of concern, including Omicron.

摘要

严重急性呼吸综合征冠状病毒2(SARS-CoV-2)仍在不断出现值得关注的病毒变种,这可能会对检测方法和作用机制产生影响。在此,我们研究了SARS-CoV-2变种中不断演变的刺突蛋白正电荷的影响,以及随后与硫酸乙酰肝素和糖萼中的血管紧张素转换酶2(ACE2)的相互作用。我们发现,带正电荷的奥密克戎变种与带负电荷的糖萼的结合速率有所提高。此外,我们还发现,虽然奥密克戎刺突蛋白与ACE2的亲和力与德尔塔变种相当,但奥密克戎刺突蛋白与硫酸乙酰肝素的相互作用显著增强,形成了刺突蛋白-硫酸乙酰肝素-ACE2三元复合物,其中大部分ACE2为双结合和三结合形式。我们的研究结果表明,SARS-CoV-2变种在病毒附着和感染过程中对硫酸乙酰肝素的依赖性越来越强。这一发现使我们能够设计出一种第二代侧流检测试纸条,利用肝素和ACE2来可靠地检测包括奥密克戎在内的所有值得关注的变种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f946/10080732/2c0131ca0a31/fx1_lrg.jpg

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