Werum Victoria, Ehrmann Matthias
Lehrstuhl für Mikrobiologie, Technische Universität München, Gregor-Mendel-Straße 4, 85354 Freising, Germany.
Lehrstuhl für Mikrobiologie, Technische Universität München, Gregor-Mendel-Straße 4, 85354 Freising, Germany.
Syst Appl Microbiol. 2023 Jul;46(4):126423. doi: 10.1016/j.syapm.2023.126423. Epub 2023 Apr 28.
The study provides a taxonomic characterization of three bacterial strains isolated from high-oxygen modified-atmosphere packaged beef from Germany. The strains of the novel species shared identical 16S rRNA gene sequence to the closely related type strain of Dellaglioa algida. However, the in-silico DNA-DNA hybridization (DDH) values indicate that they belong to a different genomic species. The in silico DDH estimate value between TMW 2.2523 and the type strain of Dellaglioa algida DSM 15638 was only 63.2 %. The whole genome average nucleotide identity blast (ANIb) value of 95.1 % between TMW 2.2523 and the closely related type strain of D. algida was within the recommended threshold value of 95-96 % for bacterial species delineation. Additionally, the phylogenomic analyses based on multi locus sequence alignment (MLSA) showed that strain TMW 2.2523 and additional strains TMW 2.2444 and TMW 2.2533 formed a monophyletic group separate from D. algida strains. Furthermore, tyrosine decarboxylase activity could be attributed to strains of the new proposed species. The results of this polyphasic approach support the affiliation of these strains to a novel species within the genus Dellaglioa for which we propose the name Dellaglioa carnosa sp. nov. The designated respective type strain is TMW 2.2523 (DSM 114968 = LMG 32819).
该研究对从德国高氧改良气调包装牛肉中分离出的三株细菌菌株进行了分类学表征。新物种的菌株与密切相关的冷戴尔氏菌模式菌株具有相同的16S rRNA基因序列。然而,电子DNA-DNA杂交(DDH)值表明它们属于不同的基因组物种。TMW 2.2523与冷戴尔氏菌模式菌株DSM 15638之间的电子DDH估计值仅为63.2%。TMW 2.2523与密切相关的冷戴尔氏菌模式菌株之间的全基因组平均核苷酸同一性比对(ANIb)值为95.1%,在细菌物种划分推荐的95-96%阈值范围内。此外,基于多位点序列比对(MLSA)的系统基因组分析表明,菌株TMW 2.2523以及另外的菌株TMW 2.2444和TMW 2.2533形成了一个与冷戴尔氏菌菌株分开的单系群。此外,酪氨酸脱羧酶活性可归因于新提出物种的菌株。这种多相方法的结果支持这些菌株隶属于戴尔氏菌属内的一个新物种,我们将其命名为肉戴尔氏菌(Dellaglioa carnosa sp. nov.)。指定的相应模式菌株是TMW 2.2523(DSM 114968 = LMG 32819)。