Pickl Mathias, Kurakin Sara, Cantú Reinhard Fabián G, Schmid Philipp, Pöcheim Alexander, Winkler Christoph K, Kroutil Wolfgang, de Visser Sam P, Faber Kurt
Department of Chemistry, Organic & Bioorganic Chemistry, University of Graz, Heinrichstrasse 28, A-8010 Graz, Austria.
The Manchester Institute of Biotechnology and School of Chemical Engineering and Analytical Science, The University of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom.
ACS Catal. 2019 Jan 4;9(1):565-577. doi: 10.1021/acscatal.8b03733. Epub 2018 Dec 6.
The majority of cytochrome P450 enzymes (CYPs) predominantly operate as monooxygenases, but recently a class of P450 enzymes was discovered, that can act as peroxygenases (CYP152). These enzymes convert fatty acids through oxidative decarboxylation, yielding terminal alkenes, and through α- and β-hydroxylation to yield hydroxy-fatty acids. Bioderived olefins may serve as biofuels, and hence understanding the mechanism and substrate scope of this class of enzymes is important. In this work, we report on the substrate scope and catalytic promiscuity of CYP OleT and two of its orthologues from the CYP152 family, utilizing α-monosubstituted branched carboxylic acids. We identify α,β-desaturation as an unexpected dominant pathway for CYP OleT with 2-methylbutyric acid. To rationalize product distributions arising from α/β-hydroxylation, oxidative decarboxylation, and desaturation depending on the substrate's structure and binding pattern, a computational study was performed based on an active site complex of CYP OleT containing the heme cofactor in the substrate binding pocket and 2-methylbutyric acid as substrate. It is shown that substrate positioning determines the accessibility of the oxidizing species (Compound I) to the substrate and hence the regio- and chemoselectivity of the reaction. Furthermore, the results show that, for 2-methylbutyric acid, α,β-desaturation is favorable because of a rate-determining α-hydrogen atom abstraction, which cannot proceed to decarboxylation. Moreover, substrate hydroxylation is energetically impeded due to the tight shape and size of the substrate binding pocket.
大多数细胞色素P450酶(CYPs)主要作为单加氧酶发挥作用,但最近发现了一类P450酶,它们可以作为过氧合酶(CYP152)。这些酶通过氧化脱羧作用转化脂肪酸,生成末端烯烃,并通过α-和β-羟基化作用生成羟基脂肪酸。生物衍生的烯烃可作为生物燃料,因此了解这类酶的作用机制和底物范围很重要。在这项工作中,我们报告了CYP OleT及其来自CYP152家族的两个直系同源物对α-单取代支链羧酸的底物范围和催化选择性。我们发现,对于2-甲基丁酸,α,β-去饱和是CYP OleT意想不到的主要反应途径。为了根据底物的结构和结合模式,解释由α/β-羟基化、氧化脱羧和去饱和产生的产物分布,我们基于CYP OleT的活性位点复合物进行了一项计算研究,该复合物在底物结合口袋中含有血红素辅因子,并以2-甲基丁酸作为底物。结果表明,底物的定位决定了氧化物种(化合物I)与底物的可及性,从而决定了反应的区域选择性和化学选择性。此外,结果表明,对于2-甲基丁酸,α,β-去饱和是有利的,因为速率决定步骤是α-氢原子的抽象,而这无法进行脱羧反应。此外,由于底物结合口袋的形状和大小紧密,底物羟基化在能量上受到阻碍。