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一种基于变压器骨干网络的改进型Yolov5s,用于支气管肺泡灌洗细胞的检测与分类。

An improved Yolov5s based on transformer backbone network for detection and classification of bronchoalveolar lavage cells.

作者信息

Wu Puzhen, Weng Han, Luo Wenting, Zhan Yi, Xiong Lixia, Zhang Hongyan, Yan Hai

机构信息

The Faculty of Architecture, Civil and Transportation Engineering, Beijing University of Technology, Beijing 100124, China.

Beijing-Dublin International College, Beijing University of Technology, Beijing 100124, China.

出版信息

Comput Struct Biotechnol J. 2023 May 6;21:2985-3001. doi: 10.1016/j.csbj.2023.05.008. eCollection 2023.

DOI:10.1016/j.csbj.2023.05.008
PMID:37249972
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10209489/
Abstract

Biological tissue information of the lung, such as cells and proteins, can be obtained from bronchoalveolar lavage fluid (BALF), through which it can be used as a complement to lung biopsy pathology. BALF cells can be confused with each other due to the similarity of their characteristics and differences in the way sections are handled or viewed. This poses a great challenge for cell detection. In this paper, An Improved Yolov5s Based on Transformer Backbone Network for Detection and Classification of BALF Cells is proposed, focusing on the detection of four types of cells in BALF: macrophages, lymphocytes, neutrophils and eosinophils. The network is mainly based on the Yolov5s network and uses Swin Transformer V2 technology in the backbone network to improve cell detection accuracy by obtaining global information; the C3Ghost module (a variant of the Convolutional Neural Network architecture) is used in the neck network to reduce the number of parameters during feature channel fusion and to improve feature expression performance. In addition, embedding intersection over union Loss (EIoU_Loss) was used as a bounding box regression loss function to speed up the bounding box regression rate, resulting in higher accuracy of the algorithm. The experiments showed that our model could achieve mAP of 81.29% and Recall of 80.47%. Compared to the original Yolov5s, the mAP has improved by 3.3% and Recall by 3.67%. We also compared it with Yolov7 and the newly launched Yolov8s. mAP improved by 0.02% and 2.36% over Yolov7 and Yolov8s respectively, while the FPS of our model was higher than both of them, achieving a balance of efficiency and accuracy, further demonstrating the superiority of our model.

摘要

肺的生物组织信息,如细胞和蛋白质,可以从支气管肺泡灌洗(BALF)中获得,通过它可以作为肺活检病理学的补充。由于BALF细胞特征相似以及切片处理或观察方式的差异,它们可能会相互混淆。这给细胞检测带来了巨大挑战。本文提出了一种基于Transformer骨干网络的改进型Yolov5s,用于BALF细胞的检测和分类,重点检测BALF中的四种细胞:巨噬细胞、淋巴细胞、中性粒细胞和嗜酸性粒细胞。该网络主要基于Yolov5s网络,在骨干网络中使用Swin Transformer V2技术,通过获取全局信息提高细胞检测精度;在颈部网络中使用C3Ghost模块(一种卷积神经网络架构变体),在特征通道融合过程中减少参数数量并提高特征表达性能。此外,采用嵌入交并比损失(EIoU_Loss)作为边界框回归损失函数,加快边界框回归速度,从而提高算法的准确性。实验表明,我们的模型可以达到81.29%的平均精度均值(mAP)和80.47%的召回率。与原始的Yolov5s相比,mAP提高了3.3%,召回率提高了3.67%。我们还将其与Yolov7和新推出的Yolov8s进行了比较。与Yolov7和Yolov8s相比,mAP分别提高了0.02%和2.36%,同时我们模型的每秒帧数(FPS)高于它们两者,实现了效率和准确性的平衡,进一步证明了我们模型的优越性。

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