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新种和新种,两种从阿塔卡马沙漠高海拔盐沼中分离出的产铁载体生物。

sp. nov. and sp. nov., two siderophore-producing organisms isolated from high-altitude salars of the Atacama Desert.

作者信息

Hintersatz Christian, Singh Shalini, Rojas Luis Antonio, Kretzschmar Jerome, Wei Sean Ting-Shyang, Khambhati Khushal, Kutschke Sabine, Lehmann Falk, Singh Vijai, Jain Rohan, Pollmann Katrin

机构信息

Department of Biotechnology, Helmholtz Institute Freiberg for Resource Technology, Helmholtz-Zentrum Dresden-Rossendorf, Dresden, Germany.

Department of Chemistry, Universidad Católica del Norte, Antofagasta, Chile.

出版信息

Front Microbiol. 2023 Jun 12;14:1194916. doi: 10.3389/fmicb.2023.1194916. eCollection 2023.

Abstract

INTRODUCTION

This study aimed to identify and characterize novel siderophore-producing organisms capable of secreting high quantities of the iron-binding compounds. In the course of this, two not yet reported halophilic strains designated ATCHA and ATCH28 were isolated from hypersaline, alkaline surface waters of Salar de Llamará and Laguna Lejía, respectively. The alkaline environment limits iron bioavailability, suggesting that native organisms produce abundant siderophores to sequester iron.

METHODS

Both strains were characterized by polyphasic approach. Comparative analysis of the 16S rRNA gene sequences revealed their affiliation with the genus . ATCHA showed close similarity to and , while ATCH28 was related closest to and . The ability of both strains to secrete siderophores was initially assessed using the chromeazurol S (CAS) liquid assay and subsequently further investigated through genomic analysis and NMR. Furthermore, the effect of various media components on the siderophore secretion by strain ATCH28 was explored.

RESULTS

The CAS assay confirmed the ability of both strains to produce iron-binding compounds. Genomic analysis of strain ATCHA revealed the presence of a not yet reported NRPS-dependant gene cluster responsible for the secretion of siderophore. However, as only small amounts of siderophore were secreted, further investigations did not lie within the scope of this study. Via NMR and genomic analysis, strain ATCH28 has been determined to produce desferrioxamine E (DFOE). Although this siderophore is common in various terrestrial microorganisms, it has not yet been reported to occur within , making strain ATCH28 the first member of the genus to produce a non-amphiphilic siderophore. By means of media optimization, the produced quantity of DFOE could be increased to more than 1000 µM.

DISCUSSION

Phenotypic and genotypic characteristics clearly differentiated both strains from other members of the genus . Average nucleotide identity (ANI) values and DNA-DNA relatedness indicated that the strains represented two novel species. Therefore, both species should be added as new representatives of the genus , for which the designations sp. nov. (type strain ATCHA = DSM 114476 = LMG 32709) and sp. nov. (type strain ATCH28 = DSM 114418 = LMG 32708) are proposed.

摘要

引言

本研究旨在鉴定和表征能够分泌大量铁结合化合物的新型铁载体产生菌。在此过程中,分别从拉马勒盐沼和莱希亚湖的高盐碱性地表水分离出两株尚未报道的嗜盐菌株,分别命名为ATCHA和ATCH28。碱性环境限制了铁的生物可利用性,这表明本地生物会产生大量铁载体来螯合铁。

方法

采用多相方法对两株菌株进行表征。16S rRNA基因序列的比较分析揭示了它们与该属的亲缘关系。ATCHA与[具体菌种1]和[具体菌种2]显示出密切的相似性,而ATCH28与[具体菌种3]和[具体菌种4]关系最为密切。最初使用铬天青S(CAS)液体试验评估了两株菌株分泌铁载体的能力,随后通过基因组分析和核磁共振进一步研究。此外,还探讨了各种培养基成分对ATCH28菌株铁载体分泌的影响。

结果

CAS试验证实了两株菌株都具有产生铁结合化合物的能力。对ATCHA菌株的基因组分析揭示了一个尚未报道的依赖非核糖体肽合成酶(NRPS)的基因簇,该基因簇负责铁载体的分泌。然而,由于仅分泌少量铁载体,进一步的研究不在本研究范围内。通过核磁共振和基因组分析,已确定ATCH28菌株产生去铁胺E(DFOE)。虽然这种铁载体在各种陆地微生物中很常见,但尚未报道在[该属名称]中出现,这使得ATCH28菌株成为该属中第一个产生非两亲性铁载体的成员。通过培养基优化,DFOE的产量可提高到1000 μM以上。

讨论

表型和基因型特征清楚地将这两株菌株与该属的其他成员区分开来。平均核苷酸同一性(ANI)值和DNA-DNA相关性表明,这些菌株代表了两个新物种。因此,这两个物种都应作为该属的新代表加入,为此提议命名为[新物种1] sp. nov.(模式菌株ATCHA = DSM 114476 = LMG 32709)和[新物种2] sp. nov.(模式菌株ATCH28 = DSM 114418 = LMG 32708)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3629/10291192/f7267691212a/fmicb-14-1194916-g001.jpg

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