Jo HyungWoo, Baek Chaeyun, Heo Young Mok, Kim Hye-Been, Lee Haeun, Kang Seunghyun, Mun Seyoung, Oh Yunseok, Ko Doyeong, Han Kyudong, Riesco Raúl, Trujillo Martha E, Lee Dong-Geol
COSMAX BTI, R&I Center, Seongnam, 13486, Republic of Korea.
Department of Microbiology, Dankook University, Cheonan, 31116, Republic of Korea.
Antonie Van Leeuwenhoek. 2023 Nov;116(11):1139-1150. doi: 10.1007/s10482-023-01873-6. Epub 2023 Sep 2.
A non-motile, novel actinobacterial strain, Kera-3, which is a gram-positive, aerobic, rod-shaped bacterium, was isolated from human keratinocytes on 1/10 diluted R2A agar. Whole-cell hydrolysis of amino acids revealed the presence of meso-DAP, alanine, and glutamic acid. The predominant menaquinone was MK-9 (H8), whereas the primary fatty acids were C and C ω9c. The major phospholipids included diphosphatidylglycerol and aminophospholipids, along with an unidentified phosphoglycolipid and an aminophosphoglycolipid. The G+C content of the genomic DNA was 73.2%, based on the complete genome sequence. Phylogenetic analyses of the 16S rRNA gene sequence and phylogenomic analysis of 91 core genes showed that strain Kera-3 formed a new lineage in the family Iamiaceae, with the closest neighbour Rhabdothermincola sediminis SYSU G02662 having 91.19% 16S rRNA gene sequence identity. A comparative genomic study of the predicted general metabolism and carbohydrate-active enzymes supported the phylogenetic and phylogenomic data. Based on the analysis of physiological, biochemical, and genomic characteristics, strain Kera-3 can be distinguished from known genera in the family Iamiaceae and represents a novel genus and species. Therefore, the name Dermatobacter hominis gen. nov., sp. nov. was proposed, with the type strain Kera-3 (= KACC 22415 = LMG 32493).
从1/10稀释的R2A琼脂上的人角质形成细胞中分离出一种非运动性的新型放线菌菌株Kera-3,它是革兰氏阳性、需氧、杆状细菌。氨基酸的全细胞水解显示存在内消旋二氨基庚二酸、丙氨酸和谷氨酸。主要的甲基萘醌是MK-9(H8),而主要脂肪酸是C和C ω9c。主要的磷脂包括二磷脂酰甘油和氨基磷脂,以及一种未鉴定的磷酸糖脂和一种氨基磷酸糖脂。基于完整基因组序列,基因组DNA的G+C含量为73.2%。16S rRNA基因序列的系统发育分析和91个核心基因的系统基因组分析表明,菌株Kera-3在艾米亚科中形成了一个新的谱系,其最接近的邻居Sediminis嗜热放线菌SYSU G02662的16S rRNA基因序列同一性为91.19%。对预测的一般代谢和碳水化合物活性酶的比较基因组研究支持了系统发育和系统基因组数据。基于生理、生化和基因组特征分析,菌株Kera-3可与艾米亚科中的已知属区分开来,代表一个新的属和种。因此,提出了人皮肤杆菌属(Dermatobacter hominis)新属新种,模式菌株为Kera-3(=KACC 22415=LMG 32493)。