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药物-靶标相互作用预测的综合综述 - 最新进展和概述。

Comprehensive Review on Drug-target Interaction Prediction - Latest Developments and Overview.

机构信息

Software Department, College of Information Technology, University of Babylon, Hillah, Babil, Iraq.

University of Warith Al-Anbiyaa, Kerbala, Iraq.

出版信息

Curr Drug Discov Technol. 2024;21(2):e010923220652. doi: 10.2174/1570163820666230901160043.

Abstract

Drug-target interactions (DTIs) are an important part of the drug development process. When the drug (a chemical molecule) binds to a target (proteins or nucleic acids), it modulates the biological behavior/function of the target, returning it to its normal state. Predicting DTIs plays a vital role in the drug discovery (DD) process as it has the potential to enhance efficiency and reduce costs. However, DTI prediction poses significant challenges and expenses due to the time-consuming and costly nature of experimental assays. As a result, researchers have increased their efforts to identify the association between medications and targets in the hopes of speeding up drug development and shortening the time to market. This paper provides a detailed discussion of the initial stage in drug discovery, namely drug-target interactions. It focuses on exploring the application of machine learning methods within this step. Additionally, we aim to conduct a comprehensive review of relevant papers and databases utilized in this field. Drug target interaction prediction covers a wide range of applications: drug discovery, prediction of adverse effects and drug repositioning. The prediction of drugtarget interactions can be categorized into three main computational methods: docking simulation approaches, ligand-based methods, and machine-learning techniques.

摘要

药物-靶点相互作用(DTIs)是药物开发过程的重要组成部分。当药物(化学分子)与靶点(蛋白质或核酸)结合时,它会调节靶点的生物行为/功能,使其恢复正常状态。预测 DTIs 在药物发现(DD)过程中起着至关重要的作用,因为它有可能提高效率和降低成本。然而,由于实验测定的耗时和昂贵性质,DTI 预测带来了重大挑战和费用。因此,研究人员加大了力度,以确定药物和靶点之间的关联,希望加快药物开发速度并缩短推向市场的时间。本文详细讨论了药物发现的初始阶段,即药物-靶点相互作用。它侧重于探索在这一步骤中应用机器学习方法。此外,我们旨在对该领域使用的相关论文和数据库进行全面审查。药物-靶点相互作用预测涵盖了广泛的应用领域:药物发现、不良作用预测和药物重定位。药物-靶点相互作用的预测可分为三种主要的计算方法:对接模拟方法、基于配体的方法和机器学习技术。

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