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基于Transformer 的深度学习方法用于公平预测肝移植后风险因素。

A transformer-based deep learning approach for fairly predicting post-liver transplant risk factors.

机构信息

Department of Biostatistics and Data Science, School of Public Health, The University of Texas Health Science Center at Houston, Houston, TX, USA.

Department of Health Data Science and Artificial Intelligence, McWilliams School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA.

出版信息

J Biomed Inform. 2024 Jan;149:104545. doi: 10.1016/j.jbi.2023.104545. Epub 2023 Nov 20.

Abstract

Liver transplantation is a life-saving procedure for patients with end-stage liver disease. There are two main challenges in liver transplant: finding the best matching patient for a donor and ensuring transplant equity among different subpopulations. The current MELD scoring system evaluates a patient's mortality risk if not receiving an organ within 90 days. However, the donor-patient matching should also consider post-transplant risk factors, such as cardiovascular disease, chronic rejection, etc., which are all common complications after transplant. Accurate prediction of these risk scores remains a significant challenge. In this study, we used predictive models to solve the above challenges. Specifically, we proposed a deep learning model to predict multiple risk factors after a liver transplant. By formulating it as a multi-task learning problem, the proposed deep neural network was trained to simultaneously predict the five post-transplant risks and achieve equal good performance by exploiting task-balancing techniques. We also proposed a novel fairness-achieving algorithm to ensure prediction fairness across different subpopulations. We used electronic health records of 160,360 liver transplant patients, including demographic information, clinical variables, and laboratory values, collected from the liver transplant records of the United States from 1987 to 2018. The model's performance was evaluated using various performance metrics such as AUROC and AUPRC. Our experiment results highlighted the success of our multi-task model in achieving task balance while maintaining accuracy. The model significantly reduced the task discrepancy by 39 %. Further application of the fairness-achieving algorithm substantially reduced fairness disparity among all sensitive attributes (gender, age group, and race/ethnicity) in each risk factor. It underlined the potency of integrating fairness considerations into the task-balancing framework, ensuring robust and fair predictions across multiple tasks and diverse demographic groups.

摘要

肝移植是治疗终末期肝病患者的一种救生手术。肝移植有两个主要挑战:为供体找到最佳匹配的患者,以及确保不同亚群之间的移植公平性。目前的 MELD 评分系统评估了如果在 90 天内未接受器官,患者的死亡风险。然而,供体与患者的匹配还应考虑移植后的风险因素,如心血管疾病、慢性排斥等,这些都是移植后的常见并发症。准确预测这些风险评分仍然是一个重大挑战。在这项研究中,我们使用预测模型来解决上述挑战。具体来说,我们提出了一种深度学习模型来预测肝移植后的多个风险因素。通过将其表述为一个多任务学习问题,所提出的深度神经网络被训练来同时预测五个移植后风险,并通过利用任务平衡技术实现同等的良好性能。我们还提出了一种新颖的公平实现算法,以确保不同亚群之间的预测公平性。我们使用了从 1987 年到 2018 年从美国肝移植记录中收集的 160360 名肝移植患者的电子健康记录,包括人口统计学信息、临床变量和实验室值。使用各种性能指标,如 AUROC 和 AUPRC,评估了模型的性能。我们的实验结果突出了我们的多任务模型在实现任务平衡的同时保持准确性方面的成功。该模型将任务差异显著降低了 39%。进一步应用公平实现算法大大降低了所有敏感属性(性别、年龄组和种族/民族)在每个风险因素中的公平差距。它强调了将公平性考虑纳入任务平衡框架的潜力,确保了跨多个任务和不同人群进行稳健和公平的预测。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e30a/11619923/8342ddbd9509/nihms-2036021-f0001.jpg

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