银屑病皮肤中长链非编码 RNA 的全基因组差异转录。
Genome-Wide Differential Transcription of Long Noncoding RNAs in Psoriatic Skin.
机构信息
Perron Institute for Neurological and Translational Science, 8 Verdun Street, Nedlands, WA 6009, Australia.
Centre for Molecular Medicine and Innovative Therapeutics, Murdoch University, Perth, WA 6150, Australia.
出版信息
Int J Mol Sci. 2023 Nov 15;24(22):16344. doi: 10.3390/ijms242216344.
Long noncoding RNAs (lncRNAs) may contribute to the formation of psoriatic lesions. The present study's objective was to identify long lncRNA genes that are differentially expressed in patient samples of psoriasis through computational analysis techniques. By using previously published RNA sequencing data from psoriatic and healthy patients (n = 324), we analysed the differential expression of lncRNAs to determine transcripts of heightened expression. We computationally screened lncRNA transcripts as annotated by GENCODE across the human genome and compared transcription in psoriatic and healthy samples from two separate studies. We observed 54 differentially expressed genes as seen in two independent datasets collected from psoriasis and healthy patients. We also identified the differential expression of LINC01215 and LINC1206 associated with the cell cycle pathway and psoriasis pathogenesis. SH3PXD2A-AS1 was identified as a participant in the STAT3/SH3PXD2A-AS1/miR-125b/STAT3 positive feedback loop. Both the SH3PXD2A-AS1 and CERNA2 genes have already been recognised as part of the IFN-γ signalling pathway regulation. Additionally, EPHA1-AS1, CYP4Z2P and SNHG12 gene upregulation have all been previously linked to inflammatory skin diseases. Differential expression of various lncRNAs affects the pathogenesis of psoriasis. Further characterisation of lncRNAs and their functions are important for developing our understanding of psoriasis.
长链非编码 RNA(lncRNAs)可能有助于银屑病皮损的形成。本研究的目的是通过计算分析技术鉴定银屑病患者样本中差异表达的长 lncRNA 基因。我们使用先前发表的来自银屑病和健康患者的 RNA 测序数据(n=324),分析 lncRNAs 的差异表达,以确定表达升高的转录本。我们在人类基因组中使用 GENCODE 注释的 lncRNA 转录本进行计算筛选,并比较来自两项独立研究的银屑病和健康样本中的转录。我们在两个独立的银屑病和健康患者数据集观察到 54 个差异表达的基因。我们还鉴定了与细胞周期途径和银屑病发病机制相关的 LINC01215 和 LINC1206 的差异表达。SH3PXD2A-AS1 被鉴定为 STAT3/SH3PXD2A-AS1/miR-125b/STAT3 正反馈环的参与者。SH3PXD2A-AS1 和 CERNA2 基因都已被认为是 IFN-γ 信号通路调节的一部分。此外,EPHAl-AS1、CYP4Z2P 和 SNHG12 基因的上调都与炎症性皮肤病有关。各种 lncRNAs 的差异表达影响银屑病的发病机制。lncRNAs 及其功能的进一步表征对于我们理解银屑病很重要。
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