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利用 SoySNP50K 和 USDA 种质资源收集数据寻找与巴西基因型蛋白质和油含量相关的新 QTL。

Exploring SoySNP50K and USDA Germplasm Collection Data to Find New QTLs Associated with Protein and Oil Content in Brazilian Genotypes.

机构信息

Laboratório de Bioquímica Genética de Plantas, BIOAGRO, Universidade Federal de Viçosa, Viçosa, MG, 21236570-900, Brazil.

Departamento de Ciências Biológicas, Universidade Estadual de Feira de Santana, Feira de Santana, BA, 44036-900, Brazil.

出版信息

Biochem Genet. 2024 Dec;62(6):4791-4803. doi: 10.1007/s10528-024-10698-5. Epub 2024 Feb 15.

DOI:10.1007/s10528-024-10698-5
PMID:38358588
Abstract

Genetic diversity within a germplasm collection plays a vital role in the success of breeding programs. However, comprehending this diversity and identifying accessions with desirable traits pose significant challenges. This study utilized publicly available data to investigate SNP markers associated with protein and oil content in Brazilian soybeans. Through this research, twenty-two new QTLs (Quantitative Trait Loci) were identified, and we highlighted the substantial influence of Roanoke, Lee and Bragg ancestor on the genetic makeup of Brazilian soybean varieties. Our findings demonstrate that certain markers are being lost in modern cultivars, while others maintain or even increase their frequency. These observations indicate genomic regions that have undergone selection during soybean introduction in Brazil and could be valuable in breeding programs aimed at enhancing protein or oil content.

摘要

种质资源内的遗传多样性对育种计划的成功起着至关重要的作用。然而,理解这种多样性并识别具有理想性状的品系仍然具有很大的挑战性。本研究利用公开数据研究了与巴西大豆的蛋白质和油分含量相关的 SNP 标记。通过这项研究,鉴定出了 22 个新的 QTL(数量性状位点),并强调了罗诺克、李和布拉格祖先对巴西大豆品种遗传组成的重要影响。我们的研究结果表明,某些标记在现代品种中正在丢失,而其他标记则保持或甚至增加了它们的频率。这些观察结果表明,在巴西大豆引种过程中经历了选择的基因组区域,这在旨在提高蛋白质或油分含量的育种计划中可能具有重要价值。

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本文引用的文献

1
Quantitative Trait Loci (QTL) Analysis of Seed Protein and Oil Content in Wild Soybean ().野生大豆种子蛋白和油含量的数量性状位点(QTL)分析。
Int J Mol Sci. 2023 Feb 17;24(4):4077. doi: 10.3390/ijms24044077.
2
POWR1 is a domestication gene pleiotropically regulating seed quality and yield in soybean.POWR1 是一个驯化基因,可多效调节大豆的种子质量和产量。
Nat Commun. 2022 Jun 1;13(1):3051. doi: 10.1038/s41467-022-30314-7.
3
Impact of multiple selective breeding programs on genetic diversity in soybean germplasm.多个选择育种计划对大豆种质遗传多样性的影响。
Theor Appl Genet. 2022 May;135(5):1591-1602. doi: 10.1007/s00122-022-04056-5. Epub 2022 Feb 27.
4
Fine mapping and cloning of the major seed protein quantitative trait loci on soybean chromosome 20.精细定位和克隆大豆 20 号染色体上主要种子蛋白数量性状位点。
Plant J. 2022 Apr;110(1):114-128. doi: 10.1111/tpj.15658. Epub 2022 Feb 10.
5
Simultaneous changes in seed size, oil content and protein content driven by selection of homologues during soybean domestication.大豆驯化过程中同源基因选择驱动种子大小、含油量和蛋白质含量的同步变化。
Natl Sci Rev. 2020 May 27;7(11):1776-1786. doi: 10.1093/nsr/nwaa110. eCollection 2020 Nov.
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Selection of GmSWEET39 for oil and protein improvement in soybean.选择 GmSWEET39 提高大豆的油分和蛋白含量。
PLoS Genet. 2020 Nov 11;16(11):e1009114. doi: 10.1371/journal.pgen.1009114. eCollection 2020 Nov.
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Natural variation and selection in GmSWEET39 affect soybean seed oil content.自然变异和选择对 GmSWEET39 影响大豆种子含油量。
New Phytol. 2020 Feb;225(4):1651-1666. doi: 10.1111/nph.16250. Epub 2019 Nov 14.
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Genome-wide association study of seed protein, oil and amino acid contents in soybean from maturity groups I to IV.大豆 I 至 IV 成熟组种子蛋白、油和氨基酸含量的全基因组关联研究。
Theor Appl Genet. 2019 Jun;132(6):1639-1659. doi: 10.1007/s00122-019-03304-5. Epub 2019 Feb 26.
9
Comparison of Genetic Diversity between Chinese and American Soybean ( (L.)) Accessions Revealed by High-Density SNPs.基于高密度单核苷酸多态性揭示的中美大豆种质资源遗传多样性比较
Front Plant Sci. 2017 Nov 30;8:2014. doi: 10.3389/fpls.2017.02014. eCollection 2017.
10
Molecular mapping and genomics of soybean seed protein: a review and perspective for the future.大豆种子蛋白质的分子图谱与基因组学:综述及未来展望
Theor Appl Genet. 2017 Oct;130(10):1975-1991. doi: 10.1007/s00122-017-2955-8. Epub 2017 Aug 11.