Kumar Vishesh, Shepard Bryan J, Rojewski Alex, Manzo Carlo, Pressé Steve
Center for Biological Physics, Arizona State University, USA.
Department of Physics, Arizona State University, USA.
bioRxiv. 2024 Feb 29:2024.02.27.582378. doi: 10.1101/2024.02.27.582378.
Diffusion coefficients often vary across regions, such as cellular membranes, and quantifying their variation can provide valuable insight into local membrane properties such as composition and stiffness. Toward quantifying diffusion coefficient spatial maps and uncertainties from particle tracks, we use a Bayesian method and place Gaussian Process (GP) Priors on the maps. For the sake of computational efficiency, we leverage inducing point methods on GPs arising from the mathematical structure of the data giving rise to non-conjugate likelihood-prior pairs. We analyze both synthetic data, where ground truth is known, as well as data drawn from live-cell single-molecule imaging of membrane proteins. The resulting tool provides an unsupervised method to rigorously map diffusion coefficients continuously across membranes without data binning.
扩散系数通常在不同区域有所变化,比如细胞膜,量化其变化可以为诸如组成和硬度等局部膜特性提供有价值的见解。为了从粒子轨迹量化扩散系数空间图和不确定性,我们使用一种贝叶斯方法,并在这些图上放置高斯过程(GP)先验。出于计算效率的考虑,我们利用诱导点方法处理由数据的数学结构产生的高斯过程,这些数据会产生非共轭似然 - 先验对。我们分析了合成数据(其真实情况已知)以及从膜蛋白的活细胞单分子成像中获取的数据。由此产生的工具提供了一种无监督方法,可在不进行数据分箱的情况下,严格地在整个膜上连续绘制扩散系数图。