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基于废水的流行病学用于监测新冠疫情:当下及未来值得关注的诊断方法

Wastewater-Based Epidemiology to monitor COVID-19 outbreak: Present and future diagnostic methods to be in your radar.

作者信息

Barceló Damià

机构信息

Department of Environmental Chemistry, Institute of Environmental Assessment and Water Research,(IDAEA-CSIC), Jordi Girona 18-26, 08034, Barcelona, Spain.

Catalan Institute of Water Research, Parc Científic I Tecnològic de La University of Girona, C/Emili Grahit, 101, Edifici H2O, 17003, Girona, Spain.

出版信息

Case Stud Chem Environ Eng. 2020 Sep;2:100042. doi: 10.1016/j.cscee.2020.100042. Epub 2020 Sep 14.

Abstract

The WHO has declared the COVID-19 epidemic on January 31, 2020. This virus has infected millions of people worldwide in just a few months. Shortly afterwards, the National Medical Products Administration (NMPA) announced nucleic acid testing as the gold standard for virus detection. Antibody testing is used as well as a supplementary test for suspected cases where nucleic acid detection was negative. In short, nucleic acid-based polymerase chain reaction (PCR) is the mainstream detection method for clinical samples as well as for the detection of SARS-CoV-2 in wastewaters. First data collected around the globe were reported in the last few months being part of the so-called Wastewater-Based Epidemiology (WBE) approach. Selection of concentration methods and primers, laboratory inter-comparison and various modalities of PCR detection of the virus in complex wastewater matrices were flagged up as main bullets that require urgent improvement. Novel approaches to enhance sensitivity, speed and automate streamlined virus detection will be discussed here as well. This list comprises devices mainly used for clinical purposes like Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR), Digital PCR, Lab-on-a-chip (LOC) and related platforms as well as Biosensors. The last part will be devoted to the identification of biomolecules to target Covid-19 outbreak based on inflammatory response biomarkers among others. To this end this opinion paper brings for discussion the issue of PCR detection and its limitations as well as new diagnostic methods in WBE.

摘要

世界卫生组织于2020年1月31日宣布新型冠状病毒肺炎疫情。这种病毒在短短几个月内就感染了全球数百万人。此后不久,国家药品监督管理局宣布核酸检测为病毒检测的金标准。抗体检测也被用作核酸检测呈阴性的疑似病例的补充检测。简而言之,基于核酸的聚合酶链反应(PCR)是临床样本以及废水中严重急性呼吸综合征冠状病毒2检测的主流检测方法。过去几个月报告了全球各地收集的首批数据,这些数据是所谓的基于废水的流行病学(WBE)方法的一部分。在复杂的废水基质中,病毒检测的浓缩方法和引物的选择、实验室间比对以及PCR检测的各种方式被视为需要紧急改进的主要要点。本文还将讨论提高灵敏度、速度和自动化简化病毒检测的新方法。这份清单包括主要用于临床目的的设备,如成簇规律间隔短回文重复序列(CRISPR)、数字PCR、芯片实验室(LOC)和相关平台以及生物传感器。最后一部分将致力于基于炎症反应生物标志物等确定针对新冠疫情的生物分子。为此,本观点文章将讨论PCR检测问题及其局限性以及WBE中的新诊断方法。

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Early SARS-CoV-2 outbreak detection by sewage-based epidemiology.基于污水的流行病学早期 SARS-CoV-2 爆发检测。
Sci Total Environ. 2020 Aug 25;732:139298. doi: 10.1016/j.scitotenv.2020.139298. Epub 2020 May 8.

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