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Investigation of autophagy‑related genes and immune infiltration in calcific aortic valve disease: A bioinformatics analysis and experimental validation.

作者信息

Hu Tie, Jiang Ying, Yang Jue-Sheng, Hu Fa-Jia, Yuan Yong, Liu Ji-Chun, Wang Li-Jun

机构信息

Department of Cardiovascular Surgery, The Second Affiliated Hospital of Nanchang University, Nanchang, Jiangxi 330006, P.R. China.

出版信息

Exp Ther Med. 2024 Mar 26;27(5):233. doi: 10.3892/etm.2024.12521. eCollection 2024 May.


DOI:10.3892/etm.2024.12521
PMID:38628660
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11019644/
Abstract

The present study aimed to elucidate the role of autophagy-related genes (ARGs) in calcific aortic valve disease (CAVD) and their potential interactions with immune infiltration via experimental verification and bioinformatics analysis. A total of three microarray datasets (GSE12644, GSE51472 and GSE77287) were obtained from the Gene Expression Omnibus database, and gene set enrichment analysis was performed to identify the relationship between autophagy and CAVD. After differentially expressed genes and differentially expressed ARGs (DEARGs) were identified using CAVD samples and normal aortic valve samples, a functional analysis was performed, including Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses, protein-protein interaction network construction, hub gene identification and validation, immune infiltration and drug prediction. The results of the present study indicated a significant relationship between autophagy and CAVD. A total of 46 DEARGs were identified. GO and pathway enrichment analyses revealed the complex roles of DEARGs in regulating CAVD, including multiple gene functions and pathways. A total of 10 hub genes were identified, with three (SPP1, CXCL12 and CXCR4) consistently upregulated in CAVD samples compared with normal aortic valve samples in multiple datasets and experimental validation. Immune infiltration analyses demonstrated significant differences in immune cell proportions between CAVD samples and normal aortic valve samples, thus showing the crucial role of immune infiltration in CAVD development. Furthermore, therapeutic drugs were predicted that could target the identified hub genes, including bisphenol A, resveratrol, progesterone and estradiol. In summary, the present study illuminated the crucial role of autophagy in CAVD development and identified key ARGs as potential therapeutic targets. In addition, the observed immune cell infiltration and predicted autophagy-related drugs suggest promising avenues for future research and novel CAVD treatments.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/21c4a8775e55/etm-27-05-12521-g08.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/618974685449/etm-27-05-12521-g00.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/e90b8f4771b5/etm-27-05-12521-g01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/ac20060e4514/etm-27-05-12521-g02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/b5da1d613021/etm-27-05-12521-g03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/307b8d90eb05/etm-27-05-12521-g04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/265161dd224d/etm-27-05-12521-g05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/82b10c9937e1/etm-27-05-12521-g06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/35e0144ccf0e/etm-27-05-12521-g07.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/21c4a8775e55/etm-27-05-12521-g08.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/618974685449/etm-27-05-12521-g00.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/e90b8f4771b5/etm-27-05-12521-g01.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/ac20060e4514/etm-27-05-12521-g02.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/b5da1d613021/etm-27-05-12521-g03.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/307b8d90eb05/etm-27-05-12521-g04.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/265161dd224d/etm-27-05-12521-g05.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/82b10c9937e1/etm-27-05-12521-g06.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/35e0144ccf0e/etm-27-05-12521-g07.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eda7/11019644/21c4a8775e55/etm-27-05-12521-g08.jpg

相似文献

[1]
Investigation of autophagy‑related genes and immune infiltration in calcific aortic valve disease: A bioinformatics analysis and experimental validation.

Exp Ther Med. 2024-3-26

[2]
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Front Physiol. 2022-12-15

[3]
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[4]
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[5]
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[6]
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[7]
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[8]
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[9]
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[10]
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引用本文的文献

[1]
Exploring associations between estrogen and gene candidates identified by coronary artery disease genome-wide association studies.

Front Cardiovasc Med. 2025-3-20

[2]
Multiomics identification of ALDH9A1 as a crucial immunoregulatory molecule involved in calcific aortic valve disease.

Sci Rep. 2024-10-9

本文引用的文献

[1]
Interplay of energy metabolism and autophagy.

Autophagy. 2024-1

[2]
Human antigen R regulates autophagic flux by stabilizing autophagy-associated mRNA in calcific aortic valve disease.

Cardiovasc Res. 2023-9-5

[3]
Sam68 promotes osteogenic differentiation of aortic valvular interstitial cells by TNF-α/STAT3/autophagy axis.

J Cell Commun Signal. 2023-9

[4]
Herpud1 deficiency alleviates homocysteine-induced aortic valve calcification.

Cell Biol Toxicol. 2023-12

[5]
CXCR4 blockade in macrophage promotes angiogenesis in ischemic hindlimb by modulating autophagy.

J Mol Cell Cardiol. 2022-8

[6]
Innate immune cells in the pathophysiology of calcific aortic valve disease: lessons to be learned from atherosclerotic cardiovascular disease?

Basic Res Cardiol. 2022-5-17

[7]
Calcified aortic valve disease complicated with and without diabetes mellitus: the underlying pathogenesis.

Rev Cardiovasc Med. 2022-1-11

[8]
Low Progesterone and Low Estradiol Levels Associate With Abdominal Aortic Aneurysms in Men.

J Clin Endocrinol Metab. 2022-3-24

[9]
Calcific aortic valve disease: from molecular and cellular mechanisms to medical therapy.

Eur Heart J. 2022-2-12

[10]
Bisphenol A Modulates Autophagy and Exacerbates Chronic Kidney Damage in Mice.

Int J Mol Sci. 2021-7-3

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