Varsou Dimitra-Danai, Kolokathis Panagiotis D, Antoniou Maria, Sidiropoulos Nikolaos K, Tsoumanis Andreas, Papadiamantis Anastasios G, Melagraki Georgia, Lynch Iseult, Afantitis Antreas
NovaMechanics MIKE, Piraeus 18545, Greece.
Entelos Institute, Larnaca 6059, Cyprus.
Comput Struct Biotechnol J. 2024 Mar 30;25:47-60. doi: 10.1016/j.csbj.2024.03.020. eCollection 2024 Dec.
The rapid advance of nanotechnology has led to the development and widespread application of nanomaterials, raising concerns regarding their potential adverse effects on human health and the environment. Traditional (experimental) methods for assessing the nanoparticles (NPs) safety are time-consuming, expensive, and resource-intensive, and raise ethical concerns due to their reliance on animals. To address these challenges, we propose an workflow that serves as an alternative or complementary approach to conventional hazard and risk assessment strategies, which incorporates state-of-the-art computational methodologies. In this study we present an automated machine learning (autoML) scheme that employs dose-response toxicity data for silver (Ag), titanium dioxide (TiO), and copper oxide (CuO) NPs. This model is further enriched with atomistic descriptors to capture the NPs' underlying structural properties. To overcome the issue of limited data availability, synthetic data generation techniques are used. These techniques help in broadening the dataset, thus improving the representation of different NP classes. A key aspect of this approach is a novel three-step applicability domain method (which includes the development of a local similarity approach) that enhances user confidence in the results by evaluating the prediction's reliability. We anticipate that this approach will significantly expedite the nanosafety assessment process enabling regulation to keep pace with innovation, and will provide valuable insights for the design and development of safe and sustainable NPs. The ML model developed in this study is made available to the scientific community as an easy-to-use web-service through the Enalos Cloud Platform (www.enaloscloud.novamechanics.com/sabydoma/safenanoscope/), facilitating broader access and collaborative advancements in nanosafety.
纳米技术的迅速发展导致了纳米材料的开发和广泛应用,引发了人们对其对人类健康和环境潜在不利影响的担忧。传统的(实验性)评估纳米颗粒(NPs)安全性的方法耗时、昂贵且资源密集,并且由于依赖动物而引发伦理问题。为应对这些挑战,我们提出了一种工作流程,作为传统危害和风险评估策略的替代或补充方法,该流程纳入了最先进的计算方法。在本研究中,我们提出了一种自动化机器学习(autoML)方案,该方案采用了银(Ag)、二氧化钛(TiO)和氧化铜(CuO)纳米颗粒的剂量反应毒性数据。该模型通过原子描述符进一步丰富,以捕捉纳米颗粒的潜在结构特性。为克服数据可用性有限的问题,使用了合成数据生成技术。这些技术有助于拓宽数据集,从而改善不同纳米颗粒类别的代表性。该方法的一个关键方面是一种新颖的三步适用性域方法(包括局部相似性方法的开发),该方法通过评估预测的可靠性来增强用户对结果的信心。我们预计,这种方法将显著加快纳米安全性评估过程,使监管能够跟上创新步伐,并将为安全和可持续纳米颗粒的设计与开发提供有价值的见解。本研究中开发的机器学习模型通过Enalos云平台(www.enaloscloud.novamechanics.com/sabydoma/safenanoscope/)作为易于使用的网络服务提供给科学界,促进纳米安全性方面更广泛的访问和合作进展。