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在肯尼亚马里加特分区医院，通过宏基因组测序在未分化发热疾病患者中鉴定出的完整编码序列。

Complete coding sequence of identified by metagenomic sequencing in patient with undifferentiated febrile illness at Marigat sub-district hospital, Kenya.

作者信息

Lemtudo Allan, Kimita Gathii, Awinda George, Mutai Beth, Waitumbi John

机构信息

Kenya Medical Research Institute/Walter Reed Army Institute of Research-Africa/Basic Science Laboratory, Kisumu, Kenya.

出版信息

Microbiol Resour Announc. 2024 Sep 10;13(9):e0036624. doi: 10.1128/mra.00366-24. Epub 2024 Jul 31.

DOI:10.1128/mra.00366-24
PMID:39083694
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11385453/
Abstract

We report on the complete coding sequence of inadvertently identified through metagenomics in a child with undifferentiated fever at Marigat sub-county hospital, Kenya. On phylogeny, the genome clustered with sequences obtained during the 2017 human outbreak in Uganda and the 2021 cattle outbreak in Kiambu, Kenya.

摘要

我们报告了在肯尼亚马里加特县医院一名不明原因发热儿童中通过宏基因组学意外鉴定出的完整编码序列。在系统发育分析中，该基因组与2017年乌干达人类疫情以及2021年肯尼亚基安布牛群疫情期间获得的序列聚类在一起。

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1
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Microbiol Resour Announc. 2024 Sep 10;13(9):e0036624. doi: 10.1128/mra.00366-24. Epub 2024 Jul 31.
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本文引用的文献

1
Genomic surveillance of Rift Valley fever virus: from sequencing to lineage assignment.裂谷热病毒的基因组监测：从测序到谱系分配。
BMC Genomics. 2022 Jul 18;23(1):520. doi: 10.1186/s12864-022-08764-6.
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Sporadic Rift Valley Fever Outbreaks in Humans and Animals in Uganda, October 2017-January 2018.2017 年 10 月至 2018 年 1 月期间，乌干达发生了人类和动物间散发性裂谷热疫情。
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Rift Valley fever: biology and epidemiology.裂谷热：生物学与流行病学。
J Gen Virol. 2019 Aug;100(8):1187-1199. doi: 10.1099/jgv.0.001296. Epub 2019 Jul 16.
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Relationship between Flooding and Out Break of Infectious Diseasesin Kenya: A Review of the Literature.肯尼亚洪水与传染病爆发之间的关系：文献综述
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Rift Valley Fever.裂谷热
Clin Lab Med. 2017 Jun;37(2):285-301. doi: 10.1016/j.cll.2017.01.004. Epub 2017 Mar 22.
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Predictive Factors and Risk Mapping for Rift Valley Fever Epidemics in Kenya.肯尼亚裂谷热疫情的预测因素与风险地图绘制
PLoS One. 2016 Jan 25;11(1):e0144570. doi: 10.1371/journal.pone.0144570. eCollection 2016.
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MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7：性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
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An assessment of the regional and national socio-economic impacts of the 2007 Rift Valley fever outbreak in Kenya.评估肯尼亚 2007 年裂谷热疫情对区域和国家社会经济的影响。
Am J Trop Med Hyg. 2010 Aug;83(2 Suppl):52-7. doi: 10.4269/ajtmh.2010.09-0291.
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New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0.新算法和方法估计最大似然系统发育：评估 PhyML 3.0 的性能。
Syst Biol. 2010 May;59(3):307-21. doi: 10.1093/sysbio/syq010. Epub 2010 Mar 29.