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染色质中间隔DNA的组织方式。

Organization of spacer DNA in chromatin.

作者信息

Lohr D, Van Holde K E

出版信息

Proc Natl Acad Sci U S A. 1979 Dec;76(12):6326-30. doi: 10.1073/pnas.76.12.6326.

DOI:10.1073/pnas.76.12.6326
PMID:392519
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC411857/
Abstract

Detailed analysis of the DNA fragment patterns produced by DNase I digestion of yeast, HeLa, and chicken erythrocyte nuclei reveals surprising features of nucleosome phasing. First, the spacer regions in phased yeast chromatin must be of lengths (10m + 5) base pairs, where m = 0, 1, 2,.... This feature is not seen in parallel studies of chicken erythrocyte chromatin. The 5-base pair increment in the yeast spacer imposes interesting restraints on the higher order structure of yeast chromatin. Second, we have been able to simulate the DNase I cutting patterns and get good agreement with the observed yeast patterns. Third, three different chromatins show a long range periodicity in the DNase I digest pattern, with a period half that of the staphylococcal nuclease repeat. These results suggest that the amount of chromatin observed in discrete extended-ladder bands is a minimum estimate of phasing and in fact phasing may be a more general feature.

摘要

对经脱氧核糖核酸酶I消化酵母、海拉细胞和鸡红细胞核所产生的DNA片段模式进行的详细分析揭示了核小体相位的惊人特征。首先,相位化酵母染色质中的间隔区长度必须为(10m + 5)个碱基对,其中m = 0、1、2 等等。在对鸡红细胞染色质的平行研究中未观察到这一特征。酵母间隔区中5个碱基对的增量对酵母染色质的高级结构施加了有趣的限制。其次,我们能够模拟脱氧核糖核酸酶I的切割模式,并与观察到的酵母模式取得良好的一致性。第三,三种不同的染色质在脱氧核糖核酸酶I消化模式中显示出长程周期性,其周期是葡萄球菌核酸酶重复周期的一半。这些结果表明,在离散的延伸梯状条带中观察到的染色质数量是相位化的最低估计值,实际上相位化可能是一个更普遍的特征。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85d8/411857/e9493fdc728a/pnas00012-0313-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85d8/411857/4ea492e9cc25/pnas00012-0311-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85d8/411857/e9493fdc728a/pnas00012-0313-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85d8/411857/4ea492e9cc25/pnas00012-0311-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/85d8/411857/e9493fdc728a/pnas00012-0313-a.jpg

相似文献

1
Organization of spacer DNA in chromatin.染色质中间隔DNA的组织方式。
Proc Natl Acad Sci U S A. 1979 Dec;76(12):6326-30. doi: 10.1073/pnas.76.12.6326.
2
Comparative subunit structure of HeLa, yeast, and chicken erythrocyte chromatin.海拉细胞、酵母和鸡红细胞染色质的比较亚基结构。
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The ISW1 and CHD1 chromatin remodelers suppress global nucleosome dynamics in living yeast cells.ISW1和CHD1染色质重塑因子抑制活酵母细胞中的整体核小体动力学。
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In diverse conditions, intrinsic chromatin condensates have liquid-like material properties.在不同的条件下,内在染色质凝聚物具有类似液体的物质特性。
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本文引用的文献

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Nuclease cleavage of chromatin at 100-nucleotide pair intervals.核酸酶以100个核苷酸对的间隔切割染色质。
Nature. 1976 Dec 9;264(5586):517-22. doi: 10.1038/264517a0.
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Mapping DNAase l-susceptible sites in nucleosomes labeled at the 5' ends.绘制5'端标记的核小体中脱氧核糖核酸酶I敏感位点图谱。
Cell. 1976 Oct;9(2):347-53. doi: 10.1016/0092-8674(76)90124-0.
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Structure of nucleosome core particles of chromatin.染色质核小体核心颗粒的结构。
异染色质结构域/复合物的生物学与物理学。
Cells. 2020 Aug 11;9(8):1881. doi: 10.3390/cells9081881.
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Interplay among ATP-Dependent Chromatin Remodelers Determines Chromatin Organisation in Yeast.ATP依赖的染色质重塑因子之间的相互作用决定了酵母中的染色质组织。
Biology (Basel). 2020 Jul 25;9(8):190. doi: 10.3390/biology9080190.
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Organization of Chromatin by Intrinsic and Regulated Phase Separation.染色质的固有和调控相分离组织。
Cell. 2019 Oct 3;179(2):470-484.e21. doi: 10.1016/j.cell.2019.08.037. Epub 2019 Sep 19.
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Nucleic Acids Res. 2019 Oct 10;47(18):9902-9924. doi: 10.1093/nar/gkz495.
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Chromatin fiber structural motifs as regulatory hubs of genome function?染色质纤维结构基元作为基因组功能的调控枢纽?
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Contrasting roles of the RSC and ISW1/CHD1 chromatin remodelers in RNA polymerase II elongation and termination.RSC 和 ISW1/CHD1 染色质重塑因子在 RNA 聚合酶 II 延伸和终止中的作用相反。
Genome Res. 2019 Mar;29(3):407-417. doi: 10.1101/gr.242032.118. Epub 2019 Jan 25.
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DNA topology in chromatin is defined by nucleosome spacing.染色质中的 DNA 拓扑结构由核小体间隔定义。
Sci Adv. 2017 Oct 27;3(10):e1700957. doi: 10.1126/sciadv.1700957. eCollection 2017 Oct.
10
Nucleosomal arrangement affects single-molecule transcription dynamics.核小体排列影响单分子转录动力学。
Proc Natl Acad Sci U S A. 2016 Nov 8;113(45):12733-12738. doi: 10.1073/pnas.1602764113. Epub 2016 Oct 24.
Nature. 1977 Sep 1;269(5623):29-36. doi: 10.1038/269029a0.
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The nucleotide sequence of bacteriophage phiX174.噬菌体φX174的核苷酸序列。
J Mol Biol. 1978 Oct 25;125(2):225-46. doi: 10.1016/0022-2836(78)90346-7.
5
DNAase I, DNAase II and staphylococcal nuclease cut at different, yet symmetrically located, sites in the nucleosome core.脱氧核糖核酸酶I、脱氧核糖核酸酶II和葡萄球菌核酸酶在核小体核心中不同但对称分布的位点进行切割。
Cell. 1978 Jul;14(3):611-27. doi: 10.1016/0092-8674(78)90246-5.
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Thermal denaturation of nucleosomal core particles.核小体核心颗粒的热变性
Nucleic Acids Res. 1978 Jan;5(1):139-60. doi: 10.1093/nar/5.1.139.
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DNA folding in the nucleosome.核小体中的DNA折叠
J Mol Biol. 1977 Oct 15;116(1):49-71. doi: 10.1016/0022-2836(77)90118-8.
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Kinetic analysis of deoxyribonuclease I cleavages in the nucleosome core: evidence for a DNA superhelix.核小体核心中脱氧核糖核酸酶I切割的动力学分析:DNA超螺旋的证据
J Mol Biol. 1978 Sep 15;124(2):391-420. doi: 10.1016/0022-2836(78)90306-6.
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Periodicity of deoxyribonuclease I digestion of chromatin.染色质脱氧核糖核酸酶I消化的周期性
Science. 1979 May 25;204(4395):855-8. doi: 10.1126/science.441739.
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Precise location of DNase I cutting sites in the nucleosome core determined by high resolution gel electrophoresis.通过高分辨率凝胶电泳确定核小体核心中DNase I切割位点的精确位置。
Nucleic Acids Res. 1979 Jan;6(1):41-56. doi: 10.1093/nar/6.1.41.