欧洲参考基因组图谱：试行一种分散式的公平生物多样性基因组学方法。
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.
作者信息
Mc Cartney Ann M, Formenti Giulio, Mouton Alice, De Panis Diego, Marins Luísa S, Leitão Henrique G, Diedericks Genevieve, Kirangwa Joseph, Morselli Marco, Salces-Ortiz Judit, Escudero Nuria, Iannucci Alessio, Natali Chiara, Svardal Hannes, Fernández Rosa, De Pooter Tim, Joris Geert, Strazisar Mojca, Wood Jonathan M D, Herron Katie E, Seehausen Ole, Watts Phillip C, Shaw Felix, Davey Robert P, Minotto Alice, Fernández José M, Böhne Astrid, Alegria Carla, Alioto Tyler, Alves Paulo C, Amorim Isabel R, Aury Jean-Marc, Backstrom Niclas, Baldrian Petr, Baltrunaite Laima, Barta Endre, BedHom Bertrand, Belser Caroline, Bergsten Johannes, Bertrand Laurie, Bilandija Helena, Binzer-Panchal Mahesh, Bista Iliana, Blaxter Mark, Borges Paulo A V, Dias Guilherme Borges, Bosse Mirte, Brown Tom, Bruggmann Rémy, Buena-Atienza Elena, Burgin Josephine, Buzan Elena, Cariani Alessia, Casadei Nicolas, Chiara Matteo, Chozas Sergio, Čiampor Fedor, Crottini Angelica, Cruaud Corinne, Cruz Fernando, Dalen Love, De Biase Alessio, Del Campo Javier, Delic Teo, Dennis Alice B, Derks Martijn F L, Diroma Maria Angela, Djan Mihajla, Duprat Simone, Eleftheriadi Klara, Feulner Philine G D, Flot Jean-François, Forni Giobbe, Fosso Bruno, Fournier Pascal, Fournier-Chambrillon Christine, Gabaldon Toni, Garg Shilpa, Gissi Carmela, Giupponi Luca, Gomez-Garrido Jessica, González Josefa, Grilo Miguel L, Grüning Björn, Guerin Thomas, Guiglielmoni Nadege, Gut Marta, Haesler Marcel P, Hahn Christoph, Halpern Balint, Harrison Peter W, Heintz Julia, Hindrikson Maris, Höglund Jacob, Howe Kerstin, Hughes Graham M, Istace Benjamin, Cock Mark J, Janžekovič Franc, Jonsson Zophonias O, Joye-Dind Sagane, Koskimäki Janne J, Krystufek Boris, Kubacka Justyna, Kuhl Heiner, Kusza Szilvia, Labadie Karine, Lähteenaro Meri, Lantz Henrik, Lavrinienko Anton, Leclère Lucas, Lopes Ricardo Jorge, Madsen Ole, Magdelenat Ghislaine, Magoga Giulia, Manousaki Tereza, Mappes Tapio, Marques Joao Pedro, Redondo Gemma I Martinez, Maumus Florian, McCarthy Shane A, Megens Hendrik-Jan, Melo-Ferreira Jose, Mendes Sofia L, Montagna Matteo, Moreno Joao, Mosbech Mai-Britt, Moura Mónica, Musilova Zuzana, Myers Eugene, Nash Will J, Nater Alexander, Nicholson Pamela, Niell Manuel, Nijland Reindert, Noel Benjamin, Noren Karin, Oliveira Pedro H, Olsen Remi-Andre, Ometto Lino, Oomen Rebekah A, Ossowski Stephan, Palinauskas Vaidas, Palsson Snaebjorn, Panibe Jerome P, Pauperio Joana, Pavlek Martina, Payen Emilie, Pawlowska Julia, Pellicer Jaume, Pesole Graziano, Pimenta Joao, Pippel Martin, Pirttilä Anna Maria, Poulakakis Nikos, Rajan Jeena, M C Rego Rúben, Resendes Roberto, Resl Philipp, Riesgo Ana, Rodin-Morch Patrik, Soares Andre E R, Fernandes Carlos Rodriguez, Romeiras Maria M, Roxo Guilherme, Rüber Lukas, Ruiz-Lopez Maria Jose, Saarma Urmas, da Silva Luis P, Sim-Sim Manuela, Soler Lucile, Sousa Vitor C, Santos Carla Sousa, Spada Alberto, Stefanovic Milomir, Steger Viktor, Stiller Josefin, Stöck Matthias, Struck Torsten H, Sudasinghe Hiranya, Tapanainen Riikka, Tellgren-Roth Christian, Trindade Helena, Tukalenko Yevhen, Urso Ilenia, Vacherie Benoit, Van Belleghem Steven M, Van Oers Kees, Vargas-Chavez Carlos, Velickovic Nevena, Vella Noel, Vella Adriana, Vernesi Cristiano, Vicente Sara, Villa Sara, Pettersson Olga Vinnere, Volckaert Filip A M, Voros Judit, Wincker Patrick, Winkler Sylke, Ciofi Claudio, Waterhouse Robert M, Mazzoni Camila J
机构信息
Genomics Institute, University of California, Santa Cruz, CA, USA.
The Vertebrate Genome Laboratory, The Rockefeller University, New York, NY, USA.
出版信息
NPJ Biodivers. 2024 Sep 17;3(1):28. doi: 10.1038/s44185-024-00054-6.
A genomic database of all Earth's eukaryotic species could contribute to many scientific discoveries; however, only a tiny fraction of species have genomic information available. In 2018, scientists across the world united under the Earth BioGenome Project (EBP), aiming to produce a database of high-quality reference genomes containing all ~1.5 million recognized eukaryotic species. As the European node of the EBP, the European Reference Genome Atlas (ERGA) sought to implement a new decentralised, equitable and inclusive model for producing reference genomes. For this, ERGA launched a Pilot Project establishing the first distributed reference genome production infrastructure and testing it on 98 eukaryotic species from 33 European countries. Here we outline the infrastructure and explore its effectiveness for scaling high-quality reference genome production, whilst considering equity and inclusion. The outcomes and lessons learned provide a solid foundation for ERGA while offering key learnings to other transnational, national genomic resource projects and the EBP.
一个包含地球上所有真核生物物种的基因组数据库可能会促成许多科学发现；然而，只有极小一部分物种拥有可用的基因组信息。2018年，世界各地的科学家联合起来开展地球生物基因组计划（EBP），旨在建立一个包含所有约150万种已知真核生物物种的高质量参考基因组数据库。作为EBP的欧洲节点，欧洲参考基因组图谱（ERGA）试图实施一种新的分散式、公平且包容的模式来生产参考基因组。为此，ERGA启动了一个试点项目，建立首个分布式参考基因组生产基础设施，并在来自33个欧洲国家的98种真核生物物种上进行测试。在此，我们概述该基础设施，并探讨其在扩大高质量参考基因组生产规模方面的有效性，同时考虑公平性和包容性。所取得的成果和经验教训为ERGA奠定了坚实基础，同时也为其他跨国、国家基因组资源项目以及EBP提供了关键经验。
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