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通过组学方法揭示土壤南极微生物在农业中的生物技术潜力。

Biotechnological potential in agriculture of soil Antarctic microorganisms revealed by omics approach.

机构信息

Laboratório de Biotecnologia Ambiental, Universidade Federal da Integração Latino- Americana, Av. Tarquίnio Joslin dos Santos, 1000 - Jd Universitário, Foz do Iguaçu, PR 85870-650, Brazil.

Complexo de Ciências Médicas e de Enfermagem, Universidade Federal de Alagoas, Campus Arapiraca, Arapiraca, Alagoas, Brazil.

出版信息

World J Microbiol Biotechnol. 2024 Oct 12;40(11):345. doi: 10.1007/s11274-024-04114-8.

DOI:10.1007/s11274-024-04114-8
PMID:39394504
Abstract

The biotechnological potential for agricultural applications in the soil in the thawing process on Whalers Bay, Deception Island, Antarctica was evaluated using a metagenomic approach through high-throughput sequencing. Approximately 22.70% of the sequences were affiliated to the phyla of the Bacteria dominion, followed by 0.26% to the Eukarya. Proteobacteria (Bacteria) and Ascomycota (Fungi) were the most abundant phyla. Thirty-two and thirty-six bacterial and fungal genera associated with agricultural biotechnological applications were observed. Streptomyces and Pythium were the most abundant genera related to the Bacteria and Oomycota, respectively. The main agricultural application associated with bacteria was nitrogen affixation; in contrast for fungi, was associated with phytopathogenic capabilities. The present study showed the need to use metagenomic technology to understand the dynamics and possible metabolic pathways associated with the microbial communities present in the soil sample in the process of thawing recovered from the Antarctic continent, which presented potential application in processes of agro-industrial interest.

摘要

利用高通量测序的宏基因组学方法,评估了南极欺骗岛 Whalers Bay 土壤解冻过程中农业应用的生物技术潜力。大约 22.70%的序列与细菌域的门有关,其次是 0.26%的真核生物。变形菌门(细菌)和子囊菌门(真菌)是最丰富的门。观察到 32 个和 36 个与农业生物技术应用相关的细菌和真菌属。链霉菌和疫霉是与细菌和卵菌纲分别最相关的最丰富的属。与细菌相关的主要农业应用是氮固定;相比之下,真菌与植物病原能力有关。本研究表明,需要使用宏基因组学技术来了解与从南极大陆恢复的土壤样本中存在的微生物群落相关的动态和可能的代谢途径,这在农业工业感兴趣的过程中具有潜在的应用。

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本文引用的文献

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Unveiling unique microbial nitrogen cycling and nitrification driver in coastal Antarctica.揭示沿海南极洲独特的微生物氮循环和硝化作用驱动因素。
Nat Commun. 2024 Apr 12;15(1):3143. doi: 10.1038/s41467-024-47392-4.
2
Analysis of Microbial Diversity in South Shetland Islands and Antarctic Peninsula Soils Based on Illumina High-Throughput Sequencing and Cultivation-Dependent Techniques.基于Illumina高通量测序和培养依赖技术的南设得兰群岛及南极半岛土壤微生物多样性分析
Microorganisms. 2023 Oct 9;11(10):2517. doi: 10.3390/microorganisms11102517.
3
Metabolically versatile psychrotolerant Antarctic bacterium Pseudomonas sp. ANT_H12B is an efficient producer of siderophores and accompanying metabolites (SAM) useful for agricultural purposes.
代谢多功能耐寒南极细菌假单胞菌 ANT_H12B 是一种高效产生铁载体和伴随代谢物 (SAM) 的细菌,这些物质对农业具有重要用途。
Microb Cell Fact. 2023 Apr 29;22(1):85. doi: 10.1186/s12934-023-02105-2.
4
Cold-tolerant phosphate-solubilizing strains promote wheat growth and yield by improving soil phosphorous (P) nutrition status.耐冷解磷菌株通过改善土壤磷(P)营养状况促进小麦生长和提高产量。
Front Microbiol. 2023 Mar 13;14:1135693. doi: 10.3389/fmicb.2023.1135693. eCollection 2023.
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Cryobacterium zhongshanensis sp. nov., an actinobacterium isolated from Antarctic soil.中山冷杆菌,一株分离自南极土壤的放线菌。
Arch Microbiol. 2023 Feb 2;205(2):79. doi: 10.1007/s00203-023-03408-z.
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Biological Control of by the Yeast In Vitro and on Tomato Fruit.酵母对[具体生物,原文未明确]的体外及番茄果实上的生物防治
Plants (Basel). 2023 Jan 4;12(2):236. doi: 10.3390/plants12020236.
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Potential for Biological Control of Root Rot Disease of Olive Trees ( L.) by Antagonistic Bacteria.拮抗细菌对油橄榄(Olea europaea L.)根腐病的生物防治潜力
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