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一种使用深度监督残差网络、残差网络和特征金字塔网络进行肾肿瘤分割的级联方法。

A cascading approach using se-resnext, resnet and feature pyramid network for kidney tumor segmentation.

作者信息

Appati Justice Kwame, Yirenkyi Isaac Adu

机构信息

Department of Computer Science, University of Ghana, Accra, Ghana.

出版信息

Heliyon. 2024 Sep 27;10(19):e38612. doi: 10.1016/j.heliyon.2024.e38612. eCollection 2024 Oct 15.

DOI:10.1016/j.heliyon.2024.e38612
PMID:39430467
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11489355/
Abstract

Accurate segmentation of kidney tumors in CT images is very important in the diagnosis of kidney cancer. Automatic semantic segmentation of the kidney tumor has shown promising results towards developing advance surgical planning techniques in the treatment of kidney tumor. However, the relatively small size of kidney tumor volume in comparison to the overall kidney volume, and its irregular distribution and shape makes it difficult to accurately segment the tumors. In addressing this issue, we proposed a coarse to fine segmentation which leverages on transfer learning using SE-ResNeXt model for the initial segmentation and ResNet and Feature Pyramid Network for the final segmentation. The processes are related and the output of the initial results was used for the final training. We trained and evaluated our method on the KITS19 dataset and achieved a dice score of 0.7388 and Jaccard score 0.7321 for the final segmentation demonstrating promising results when compared to other approaches.

摘要

在肾癌诊断中,CT图像中肾脏肿瘤的准确分割非常重要。肾脏肿瘤的自动语义分割在开发先进的肾脏肿瘤治疗手术规划技术方面已显示出有前景的结果。然而,与整个肾脏体积相比,肾脏肿瘤体积相对较小,且其分布和形状不规则,这使得准确分割肿瘤变得困难。为了解决这个问题,我们提出了一种从粗到细的分割方法,该方法利用迁移学习,使用SE-ResNeXt模型进行初始分割,使用ResNet和特征金字塔网络进行最终分割。这些过程是相关的,初始结果的输出用于最终训练。我们在KITS19数据集上对我们的方法进行了训练和评估,最终分割的骰子系数得分为0.7388,杰卡德系数得分为0.7321,与其他方法相比显示出有前景的结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/b1a3c3ebc60f/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/6c93362b9329/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/6443bd623ba2/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/ca8cbbba0133/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/c304bb857010/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/67f6c811da8e/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/4be78e7307a6/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/5374bbcef0c7/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/b1a3c3ebc60f/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/6c93362b9329/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/6443bd623ba2/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/ca8cbbba0133/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/c304bb857010/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/67f6c811da8e/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/4be78e7307a6/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/5374bbcef0c7/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e1ff/11489355/b1a3c3ebc60f/gr8.jpg

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本文引用的文献

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Segmentation of kidney mass using AgDenseU-Net 2.5D model.使用 AgDenseU-Net 2.5D 模型对肾脏肿块进行分割。
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FYU-Net: A Cascading Segmentation Network for Kidney Tumor Medical Imaging.FYU-Net:一种用于肾脏肿瘤医学成像的级联分割网络。
Comput Math Methods Med. 2022 Oct 18;2022:4792532. doi: 10.1155/2022/4792532. eCollection 2022.
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A deep learning-based precision and automatic kidney segmentation system using efficient feature pyramid networks in computed tomography images.
基于深度学习的高效特征金字塔网络在 CT 图像中的精准自动肾脏分割系统。
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