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基于 MRI 的深度学习分割与放射组学纹理分析预测股骨头坏死塌陷。

Prediction of femoral head collapse in osteonecrosis using deep learning segmentation and radiomics texture analysis of MRI.

机构信息

Department of Orthopaedics, Zhongshan Hospital of Traditional Chinese Medicine Affiliated to Guangzhou University of Traditional Chinese Medicine, Zhongshan, Guangdong, China.

Guangzhou University of Chinese Medicine, Guangzhou, Guangdong, China.

出版信息

BMC Med Inform Decis Mak. 2024 Oct 31;24(1):320. doi: 10.1186/s12911-024-02722-w.

Abstract

BACKGROUND

Femoral head collapse is a critical pathological change and is regarded as turning point in disease progression in osteonecrosis of the femoral head (ONFH). In this study, we aim to build an automatic femoral head collapse prediction pipeline for ONFH based on magnetic resonance imaging (MRI) radiomics.

METHODS

In the segmentation model development dataset, T1-weighted MRI of 222 hips from two hospitals were retrospectively collected and randomly split into training (n = 190) and test (n = 32) sets. In the prognosis prediction model development dataset, 206 hips were also retrospectively collected from two hospitals and divided into training set (n = 155) and external test set (n = 51) according to data source. A deep learning model for automatic lesion segmentation was trained with nnU-Net, from which three-dimensional regions of interest were segmented and a total of 107 radiomics features were extracted. After intra-class correlation coefficients screening, feature correlation coefficient screening and Least Absolute Shrinkage and Selection Operator regression feature selection, a machine learning model for ONFH prognosis prediction was trained with Logistic Regression (LR) and Light Gradient Boosting Machine (LightGBM) algorithm.

RESULTS

The segmentation model achieved an average dice similarity coefficient of 0.848 and an average 95% Hausdorff distance of 3.794 in the test set, compared to the manual segmentation results. After feature selection, nine radiomics features were included in the prognosis prediction model. External test showed that the LightGBM model exhibited acceptable predictive performance. The area under the curve (AUC) of the prediction model was 0.851 (95% CI: 0.7268-0.9752), with an accuracy of 0.765, sensitivity of 0.833, and specificity of 0.727. Decision curve analysis showed that the LightGBM model exhibited favorable clinical utility.

CONCLUSION

This study presents an automated pipeline for predicting femoral head collapse in ONFH with acceptable performance. Further research is necessary to determine the clinical applicability of this radiomics-based approach and to assess its potential to assist in treatment decision-making for ONFH.

摘要

背景

股骨头塌陷是骨坏死(ONFH)疾病进展的关键病理变化,被视为疾病进展的转折点。本研究旨在基于磁共振成像(MRI)放射组学建立 ONFH 自动股骨头塌陷预测模型。

方法

在分割模型开发数据集,回顾性收集了来自两个医院的 222 髋 T1 加权 MRI,并随机分为训练集(n=190)和测试集(n=32)。在预后预测模型开发数据集,同样回顾性收集了来自两个医院的 206 髋,并根据数据来源分为训练集(n=155)和外部测试集(n=51)。使用 nnU-Net 训练自动病变分割的深度学习模型,从该模型中分割三维感兴趣区,并提取总共 107 个放射组学特征。经过组内相关系数筛选、特征相关性系数筛选和最小绝对收缩和选择算子回归特征选择后,使用逻辑回归(LR)和 Light Gradient Boosting Machine(LightGBM)算法训练 ONFH 预后预测的机器学习模型。

结果

与手动分割结果相比,分割模型在测试集的平均骰子相似系数为 0.848,平均 95% Hausdorff 距离为 3.794。经过特征选择,预后预测模型纳入 9 个放射组学特征。外部测试表明,LightGBM 模型具有可接受的预测性能。预测模型的曲线下面积(AUC)为 0.851(95%CI:0.7268-0.9752),准确率为 0.765,灵敏度为 0.833,特异度为 0.727。决策曲线分析表明,LightGBM 模型具有良好的临床实用性。

结论

本研究提出了一种用于预测 ONFH 股骨头塌陷的自动化流水线,具有良好的性能。需要进一步研究以确定这种基于放射组学方法的临床适用性,并评估其在 ONFH 治疗决策中的潜在应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/66a2/11526660/611ba1d506c1/12911_2024_2722_Fig1_HTML.jpg

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