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用于光镊的深度学习

Deep learning for optical tweezers.

作者信息

Ciarlo Antonio, Ciriza David Bronte, Selin Martin, Maragò Onofrio M, Sasso Antonio, Pesce Giuseppe, Volpe Giovanni, Goksör Mattias

机构信息

Department of Physics, University of Gothenburg, Gothenburg, Sweden.

CNR-IPCF, Istituto per i Processi Chimico-Fisici, Messina, Italy.

出版信息

Nanophotonics. 2024 May 23;13(17):3017-3035. doi: 10.1515/nanoph-2024-0013. eCollection 2024 Jul.

DOI:10.1515/nanoph-2024-0013
PMID:39634937
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11502085/
Abstract

Optical tweezers exploit light-matter interactions to trap particles ranging from single atoms to micrometer-sized eukaryotic cells. For this reason, optical tweezers are a ubiquitous tool in physics, biology, and nanotechnology. Recently, the use of deep learning has started to enhance optical tweezers by improving their design, calibration, and real-time control as well as the tracking and analysis of the trapped objects, often outperforming classical methods thanks to the higher computational speed and versatility of deep learning. In this perspective, we show how cutting-edge deep learning approaches can remarkably improve optical tweezers, and explore the exciting, new future possibilities enabled by this dynamic synergy. Furthermore, we offer guidelines on integrating deep learning with optical trapping and optical manipulation in a reliable and trustworthy way.

摘要

光镊利用光与物质的相互作用来捕获从单个原子到微米大小的真核细胞等各种粒子。因此,光镊是物理学、生物学和纳米技术中一种普遍使用的工具。最近,深度学习的应用开始通过改进光镊的设计、校准和实时控制以及对捕获物体的跟踪和分析来增强光镊,由于深度学习具有更高的计算速度和通用性,其性能往往优于传统方法。从这个角度来看,我们展示了前沿的深度学习方法如何能显著改进光镊,并探索这种动态协同作用带来的令人兴奋的新的未来可能性。此外,我们还提供了关于以可靠且值得信赖的方式将深度学习与光镊和光操纵相结合的指导方针。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/db27c256a2e3/j_nanoph-2024-0013_fig_007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/5e5b42002ab6/j_nanoph-2024-0013_fig_001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/fae0f640dab6/j_nanoph-2024-0013_fig_002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/f84517bfe43a/j_nanoph-2024-0013_fig_003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/56aeaa230186/j_nanoph-2024-0013_fig_004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/1fbdf4306793/j_nanoph-2024-0013_fig_005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/83f0f9ff7cc1/j_nanoph-2024-0013_fig_006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/db27c256a2e3/j_nanoph-2024-0013_fig_007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/5e5b42002ab6/j_nanoph-2024-0013_fig_001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/fae0f640dab6/j_nanoph-2024-0013_fig_002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/f84517bfe43a/j_nanoph-2024-0013_fig_003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/56aeaa230186/j_nanoph-2024-0013_fig_004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/1fbdf4306793/j_nanoph-2024-0013_fig_005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/83f0f9ff7cc1/j_nanoph-2024-0013_fig_006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1664/11502085/db27c256a2e3/j_nanoph-2024-0013_fig_007.jpg

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本文引用的文献

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Deep learning-based method for analyzing the optically trapped sperm rotation.基于深度学习的方法分析光阱中精子的旋转运动。
Sci Rep. 2023 Aug 3;13(1):12575. doi: 10.1038/s41598-023-39819-7.
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Modelling red blood cell optical trapping by machine learning improved geometrical optics calculations.通过机器学习对红细胞光学捕获进行建模改进了几何光学计算。
Biomed Opt Express. 2023 Jun 27;14(7):3748-3762. doi: 10.1364/BOE.488931. eCollection 2023 Jul 1.
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Fickian yet non-Gaussian diffusion of a quasi-2D colloidal system in an optical speckle field: experiment and simulations.
光学散斑场中拟二维胶体系统的菲克型而非高斯扩散:实验与模拟。
Sci Rep. 2023 May 6;13(1):7408. doi: 10.1038/s41598-023-34433-z.
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Faster and More Accurate Geometrical-Optics Optical Force Calculation Using Neural Networks.使用神经网络实现更快、更准确的几何光学光力计算。
ACS Photonics. 2022 Dec 19;10(1):234-241. doi: 10.1021/acsphotonics.2c01565. eCollection 2023 Jan 18.
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A model-system of Fickian yet non-Gaussian diffusion: light patterns in place of complex matter.菲克型非高斯扩散的模型系统:用光模式替代复杂物质。
Soft Matter. 2022 Jan 5;18(2):351-364. doi: 10.1039/d1sm01133b.
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Optical tweezers in single-molecule biophysics.单分子生物物理学中的光镊
Nat Rev Methods Primers. 2021;1. doi: 10.1038/s43586-021-00021-6. Epub 2021 Mar 25.
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Particle Classification through the Analysis of the Forward Scattered Signal in Optical Tweezers.基于光镊中前向散射信号分析的粒子分类。
Sensors (Basel). 2021 Sep 15;21(18):6181. doi: 10.3390/s21186181.
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Highly accurate protein structure prediction with AlphaFold.利用 AlphaFold 进行高精度蛋白质结构预测。
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Rapid Fickian Yet Non-Gaussian Diffusion after Subdiffusion.快速菲克扩散但非高斯扩散。
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