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一种用于医学体数据的端到端隐式神经表示架构。

An end-to-end implicit neural representation architecture for medical volume data.

作者信息

Sheibanifard Armin, Yu Hongchuan, Ruan Zongcai, Zhang Jian J

机构信息

NCCA, Bournemouth University, Poole, United Kingdom.

Key Laboratory of Child Development and Learning Science, South-East University, Nanjing, China.

出版信息

PLoS One. 2025 Jan 3;20(1):e0314944. doi: 10.1371/journal.pone.0314944. eCollection 2025.

Abstract

Medical volume data are rapidly increasing, growing from gigabytes to petabytes, which presents significant challenges in organisation, storage, transmission, manipulation, and rendering. To address the challenges, we propose an end-to-end architecture for data compression, leveraging advanced deep learning technologies. This architecture consists of three key modules: downsampling, implicit neural representation (INR), and super-resolution (SR). We employ a trade-off point method to optimise each module's performance and achieve the best balance between high compression rates and reconstruction quality. Experimental results on multi-parametric MRI data demonstrate that our method achieves a high compression rate of up to 97.5% while maintaining superior reconstruction accuracy, with a Peak Signal-to-Noise Ratio (PSNR) of 40.05 dB and Structural Similarity Index (SSIM) of 0.96. This approach significantly reduces GPU memory requirements and processing time, making it a practical solution for handling large medical datasets.

摘要

医学体数据正在迅速增长,从千兆字节增长到拍字节,这在组织、存储、传输、处理和渲染方面带来了重大挑战。为应对这些挑战,我们提出了一种利用先进深度学习技术进行数据压缩的端到端架构。该架构由三个关键模块组成:下采样、隐式神经表示(INR)和超分辨率(SR)。我们采用权衡点方法来优化每个模块的性能,并在高压缩率和重建质量之间实现最佳平衡。对多参数MRI数据的实验结果表明,我们的方法在保持卓越重建精度的同时,实现了高达97.5%的高压缩率,峰值信噪比(PSNR)为40.05 dB,结构相似性指数(SSIM)为0.96。这种方法显著降低了GPU内存需求和处理时间,使其成为处理大型医学数据集的实用解决方案。

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