Egorshina Anna, Lukyantsev Mikhail, Golubev Sergey, Boulygina Eugenia, Khilyas Irina, Muratova Anna
Research and Development, Organic Park LLC, 420095 Kazan, Russia.
Institute of Biochemistry and Physiology of Plants and Microorganisms, Saratov Scientific Centre of the Russian Academy of Sciences (IBPPM RAS), 410049 Saratov, Russia.
Microorganisms. 2025 Feb 20;13(3):474. doi: 10.3390/microorganisms13030474.
are widely known as phytopathogenic bacteria, but among them, there are also plant-friendly strains that can promote plant growth (PGPR). The -like strain OPT-41 was isolated from seedlings as a potential PGPR. The cells (0.9-1.3 × 1.5-3.1 µm) of this microorganism are Gram-negative, rod-shaped, motile (with peritrichous flagella), and non-spore- and non-capsule-forming. The 16S rRNA gene sequence analyses showed it is located in the family and has a pairwise similarity above the species delineation threshold of 98.65% with several of its members: (99.21%), Pantoea bathycoeliae (98.93%), (98.87%), (98.83%), (98.82%), (98.76%) and (98.75%). Whole genome-based taxonomy performed on the Type (Strain) Genome Server clarified the status of strain OPT-41, detecting it as a potential new species in the genus . The microorganism under study was the most closely related to the type strain of , demonstrating 27.2% similarity in dDDH, 83.44% similarity in OrthoANIu, and 1.9% difference in G+C content. The major fatty acids of strain OPT-41 were 9 C, C, and C. A combination of genome-based taxonomy and traditional polyphasic taxonomy clearly indicated that strain OPT-41 belongs to a novel species, for which the name sp. nov was proposed. OPT-41 (=IBPPM 712=VKM B-3873D=CCTCC AB 2024361) has been designated as the type strain. In addition, OPT-41 was found to have low degradation potential for host plant pectins and proteins and be friendly in and crops.
它们广为人知是植物病原细菌,但其中也有可促进植物生长的植物友好型菌株(PGPR)。类菌株OPT-41是从幼苗中分离出来的一种潜在PGPR。这种微生物的细胞(0.9 - 1.3×1.5 - 3.1 µm)为革兰氏阴性、杆状、具运动性(有周生鞭毛),不形成芽孢和荚膜。16S rRNA基因序列分析表明它位于 科,与该科的几个成员在物种划分阈值98.65%以上具有成对相似性: (99.21%)、深海泛菌(98.93%)、 (98.87%)、 (98.83%)、 (98.82%)、 (98.76%)和 (98.75%)。在类型(菌株)基因组服务器上进行的基于全基因组的分类学研究明确了菌株OPT-41的地位,将其检测为 属中的一个潜在新物种。所研究的微生物与 的模式菌株关系最为密切,在dDDH中显示出27.2%的相似性,在OrthoANIu中显示出83.44%的相似性,在G+C含量上有1.9%的差异。菌株OPT-41的主要脂肪酸为9C、C和C。基于基因组的分类学与传统多相分类学相结合清楚地表明菌株OPT-41属于一个新的 物种,为此提出了新种名 sp. nov。OPT-41(=IBPPM 712=VKM B - 3873D=CCTCC AB 2024361)已被指定为模式菌株。此外,发现OPT-41对寄主植物果胶和蛋白质的降解潜力较低,对 作物和 作物友好。